Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACHGLA_RS15325 Genome accession   NZ_CP171841
Coordinates   3510891..3511892 (-) Length   333 a.a.
NCBI ID   WP_395361092.1    Uniprot ID   -
Organism   Streptomyces sp. YH02     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3505891..3516892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGLA_RS15305 (ACHGLA_15305) pfkB 3506360..3507313 (-) 954 WP_395361086.1 1-phosphofructokinase -
  ACHGLA_RS15310 (ACHGLA_15310) - 3507310..3508071 (-) 762 WP_318210812.1 DeoR/GlpR family DNA-binding transcription regulator -
  ACHGLA_RS15315 (ACHGLA_15315) - 3508256..3509806 (-) 1551 WP_395361088.1 MFS transporter -
  ACHGLA_RS15320 (ACHGLA_15320) - 3509869..3510828 (+) 960 WP_395361090.1 helix-turn-helix transcriptional regulator -
  ACHGLA_RS15325 (ACHGLA_15325) rpoS 3510891..3511892 (-) 1002 WP_395361092.1 RNA polymerase sigma factor RpoD/SigA Regulator
  ACHGLA_RS15330 (ACHGLA_15330) - 3512276..3513409 (+) 1134 WP_395361093.1 questin oxidase family protein -
  ACHGLA_RS15335 (ACHGLA_15335) - 3513442..3514248 (-) 807 WP_395361095.1 dioxygenase -
  ACHGLA_RS15340 (ACHGLA_15340) - 3514373..3514861 (+) 489 WP_395361096.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHGLA_RS15345 (ACHGLA_15345) - 3514898..3516427 (-) 1530 WP_395361097.1 MFS transporter -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37322.13 Da        Isoelectric Point: 4.9742

>NTDB_id=949289 ACHGLA_RS15325 WP_395361092.1 3510891..3511892(-) (rpoS) [Streptomyces sp. YH02]
MATRAVARRQTSATSGAARASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEIESEAG
GASREELEALYEAGERAKDLFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELDTKPERVVDVLDWARDPVSLNMSVDDEGETQ
FGDLLEDTSAISPEQSVLTLLRSEELDDLIDKLDHRTASIIRMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KKMARDTGFDAVA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=949289 ACHGLA_RS15325 WP_395361092.1 3510891..3511892(-) (rpoS) [Streptomyces sp. YH02]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGACCTCCGCCACGAGCGGGGCCGCACGGGCAAGCAGCGTTCGCGCCGTGGG
CGGGGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCCCTGCTCGACGCCGCCAAGG
AGGTCGAGCTCTCGCAGACGATCGAGGCGGGCGTCTACGCCCGGCAGATACTCGACGGTGAGATCGAGTCCGAGGCCGGC
GGCGCGTCCCGCGAGGAGCTCGAAGCCCTCTACGAGGCGGGCGAGCGTGCCAAGGACCTCTTCATCAAGTCCAATCTGCG
GCTCGTGGTGGCCGTCGCCCGGCGCTACCCGCGCAGCGGACTGCCGCTGCTCGACCTGATCCAGGAAGGGAACGCGGGCT
TGGTGCGCGCGGTCGAGAAGTTCGACTACGCGAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGGCAGGCC
ATCACCCGGTCCATCGCCGACCAGTCCCGCACGATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGCCG
GGTGCAGCGCGAGTTCAACCGCGAGCACGGCCGCGAGCCGGAGCCGGCGGAGATCGCGGCCGAGCTGGACACGAAGCCCG
AGCGGGTCGTCGACGTGCTCGACTGGGCGCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACGCAG
TTCGGCGACCTCCTGGAGGACACGTCGGCGATCTCGCCGGAGCAGTCGGTGCTCACGCTGCTGCGCAGCGAGGAACTCGA
CGACCTCATCGACAAGCTCGACCACCGGACGGCGTCGATCATCCGCATGCGGTACGGGATCGAGGACGGACGCGAGCGGA
CGCTGACGGAGGTCGGCAAGCAGCACGGCCTGACGCGCGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAACTG
AAGAAGATGGCGCGCGACACGGGCTTCGACGCGGTGGCCTAG

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70, region 4 (Sigma70_r4)

(270-322)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(101-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

90.09

0.36