Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   WFE12_RS13420 Genome accession   NZ_CP147877
Coordinates   2559083..2559379 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2554083..2564379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS13375 tasA 2554491..2555276 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  WFE12_RS13380 sipW 2555340..2555912 (-) 573 WP_003246088.1 signal peptidase I -
  WFE12_RS13385 tapA 2555896..2556657 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WFE12_RS13390 yqzG 2556929..2557255 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WFE12_RS13395 spoIIT 2557297..2557476 (-) 180 WP_003230176.1 YqzE family protein -
  WFE12_RS13400 comGG 2557547..2557921 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WFE12_RS13405 comGF 2557922..2558305 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WFE12_RS13410 comGE 2558331..2558678 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WFE12_RS13415 comGD 2558662..2559093 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WFE12_RS13420 comGC 2559083..2559379 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  WFE12_RS13425 comGB 2559393..2560430 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  WFE12_RS13430 comGA 2560417..2561487 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  WFE12_RS13435 corA 2561899..2562852 (-) 954 WP_032723504.1 magnesium transporter CorA -
  WFE12_RS13440 yqhB 2562995..2564323 (+) 1329 WP_009967730.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=949151 WFE12_RS13420 WP_003230162.1 2559083..2559379(-) (comGC) [Bacillus subtilis subsp. subtilis str. 168]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=949151 WFE12_RS13420 WP_003230162.1 2559083..2559379(-) (comGC) [Bacillus subtilis subsp. subtilis str. 168]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378