Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WFE12_RS13175 Genome accession   NZ_CP147877
Coordinates   2519434..2520237 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2514434..2525237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS13150 glpQ 2515580..2516311 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  WFE12_RS13155 yqiI 2516390..2517010 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  WFE12_RS13160 yqiH 2517025..2517318 (-) 294 WP_003230284.1 lipoprotein -
  WFE12_RS13165 - 2517626..2517778 (+) 153 WP_003230276.1 hypothetical protein -
  WFE12_RS13170 yqiG 2517851..2518969 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  WFE12_RS13175 spo0A 2519434..2520237 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WFE12_RS13180 spoIVB 2520513..2521793 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  WFE12_RS13185 recN 2521968..2523698 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  WFE12_RS13190 argR 2523735..2524184 (-) 450 WP_003230265.1 arginine repressor ArgR -
  WFE12_RS13195 yqxC 2524282..2525127 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=949143 WFE12_RS13175 WP_003226427.1 2519434..2520237(-) (spo0A) [Bacillus subtilis subsp. subtilis str. 168]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=949143 WFE12_RS13175 WP_003226427.1 2519434..2520237(-) (spo0A) [Bacillus subtilis subsp. subtilis str. 168]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1