Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WFE12_RS12190 Genome accession   NZ_CP147877
Coordinates   2342215..2342835 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2337215..2347835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS12150 ypqE 2338346..2338852 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  WFE12_RS12155 ypqA 2338990..2339409 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  WFE12_RS12160 yppG 2339430..2339807 (-) 378 WP_004398696.1 YppG family protein -
  WFE12_RS12165 yppF 2339995..2340183 (+) 189 WP_003230690.1 YppF family protein -
  WFE12_RS12170 yppE 2340222..2340593 (-) 372 WP_003246080.1 YppE family protein -
  WFE12_RS12175 yppD 2340639..2340884 (-) 246 WP_004398488.1 YppD family protein -
  WFE12_RS12180 sspM 2341083..2341187 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WFE12_RS12185 yppC 2341212..2342174 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  WFE12_RS12190 recU 2342215..2342835 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WFE12_RS12195 ponA 2342857..2345601 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  WFE12_RS12200 ypoC 2345677..2346171 (-) 495 WP_009967579.1 YpoC family protein -
  WFE12_RS12205 nth 2346168..2346827 (-) 660 WP_009967580.1 endonuclease III -
  WFE12_RS12210 dnaD 2346846..2347544 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=949142 WFE12_RS12190 WP_004399067.1 2342215..2342835(+) (recU) [Bacillus subtilis subsp. subtilis str. 168]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=949142 WFE12_RS12190 WP_004399067.1 2342215..2342835(+) (recU) [Bacillus subtilis subsp. subtilis str. 168]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1