Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WFE12_RS07990 Genome accession   NZ_CP147877
Coordinates   1519280..1519558 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1514280..1524558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS07970 - 1515467..1516378 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  WFE12_RS07975 ampS 1516412..1517644 (-) 1233 WP_003232341.1 aminopeptidase -
  WFE12_RS07980 ykpC 1517754..1517888 (-) 135 WP_003238865.1 protein YkpC -
  WFE12_RS07985 mreBH 1517989..1518996 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WFE12_RS07990 abrB 1519280..1519558 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WFE12_RS07995 kinC 1519748..1521034 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WFE12_RS08000 ykqA 1521050..1521883 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  WFE12_RS08005 ktrC 1521946..1522611 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WFE12_RS08010 ade 1522766..1524499 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=949137 WFE12_RS07990 WP_003244728.1 1519280..1519558(+) (abrB) [Bacillus subtilis subsp. subtilis str. 168]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=949137 WFE12_RS07990 WP_003244728.1 1519280..1519558(+) (abrB) [Bacillus subtilis subsp. subtilis str. 168]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576