Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WFE12_RS05805 Genome accession   NZ_CP147877
Coordinates   1118521..1119099 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113521..1124099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS05785 hemAT 1114032..1115330 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  WFE12_RS05790 yhfW 1115469..1116998 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  WFE12_RS05795 yhxC 1117110..1117967 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  WFE12_RS05800 yhzC 1117995..1118228 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  WFE12_RS05805 comK 1118521..1119099 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  WFE12_RS05810 yhxD 1119146..1120045 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  WFE12_RS05815 yhjA 1120262..1120531 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  WFE12_RS05820 yhjB 1120574..1122043 (-) 1470 WP_003233134.1 sodium:solute symporter -
  WFE12_RS05825 yhjC 1122040..1122240 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  WFE12_RS05830 - 1122448..1122810 (-) 363 WP_003233132.1 hypothetical protein -
  WFE12_RS05835 yhjE 1122962..1123585 (+) 624 WP_010886465.1 VTT domain-containing protein -
  WFE12_RS05840 lepB 1123587..1124093 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=949123 WFE12_RS05805 WP_003245329.1 1118521..1119099(+) (comK) [Bacillus subtilis subsp. subtilis str. 168]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=949123 WFE12_RS05805 WP_003245329.1 1118521..1119099(+) (comK) [Bacillus subtilis subsp. subtilis str. 168]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1