Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8630_RS00940 Genome accession   NZ_AP028414
Coordinates   188430..189935 (-) Length   501 a.a.
NCBI ID   WP_317667374.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12583     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 183430..194935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8630_RS00910 (I12583_01750) - 183632..184816 (-) 1185 WP_002854511.1 metallophosphoesterase -
  R8630_RS00915 (I12583_01760) - 184826..185035 (-) 210 WP_002857271.1 alkylphosphonate utilization protein -
  R8630_RS00920 (I12583_01770) - 185028..185747 (-) 720 WP_002857490.1 TerC family protein -
  R8630_RS00925 (I12583_01780) purN 185819..186385 (-) 567 WP_002857468.1 phosphoribosylglycinamide formyltransferase -
  R8630_RS00930 (I12583_01790) - 186376..187746 (-) 1371 WP_002857614.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  R8630_RS00935 (I12583_01800) - 187730..188428 (-) 699 WP_002857316.1 NYN domain-containing protein -
  R8630_RS00940 (I12583_01810) comM 188430..189935 (-) 1506 WP_317667374.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8630_RS00945 (I12583_01820) def 189932..190459 (-) 528 WP_002851936.1 peptide deformylase -
  R8630_RS00950 (I12583_01830) clpP 190495..191079 (-) 585 WP_317667375.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R8630_RS00955 (I12583_01840) tig 191079..192413 (-) 1335 WP_032581807.1 trigger factor -
  R8630_RS00960 (I12583_01850) folE 192556..193128 (+) 573 WP_002851990.1 GTP cyclohydrolase I FolE -
  R8630_RS00965 (I12583_01860) fliI 193128..194513 (+) 1386 WP_002857326.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56447.49 Da        Isoelectric Point: 8.7353

>NTDB_id=94911 R8630_RS00940 WP_317667374.1 188430..189935(-) (comM) [Campylobacter jejuni strain IDH-12583]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFSHFNKQIIE
SLREPLEDYKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYIAMDEISK
DDKVSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=94911 R8630_RS00940 WP_317667374.1 188430..189935(-) (comM) [Campylobacter jejuni strain IDH-12583]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGCATGTGTGCTAAACGCCTTGTT
TATATCATGCCCCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTAGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTTCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTGGAGGATTATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGCGTTTGTAGCGAAAATGAGA
TTAAAAAGTATAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATATAGCTATGGATGAGATCAGCAAG
GATGATAAAGTAAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTGGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTGAGTCGTTTTTGTGTATTGGAAAAAGATGCTAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCACTCAATAAAATTTTAAAAGTTTCAAGAAGTATAGCAGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.094

99.601

0.469

Multiple sequence alignment