Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ACG3JK_RS08810 Genome accession   NZ_CP171738
Coordinates   1717913..1718362 (+) Length   149 a.a.
NCBI ID   WP_003107776.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M23     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712913..1723362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JK_RS08785 (ACG3JK_08785) - 1713062..1714429 (-) 1368 WP_003105465.1 MATE family efflux transporter -
  ACG3JK_RS08790 (ACG3JK_08790) - 1714542..1715069 (+) 528 WP_004235118.1 5-formyltetrahydrofolate cyclo-ligase -
  ACG3JK_RS08795 (ACG3JK_08795) - 1715066..1715740 (+) 675 WP_003107780.1 rhomboid family intramembrane serine protease -
  ACG3JK_RS08800 (ACG3JK_08800) galU 1715763..1716668 (-) 906 WP_003103063.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACG3JK_RS08805 (ACG3JK_08805) - 1716690..1717706 (-) 1017 WP_003107779.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  ACG3JK_RS08810 (ACG3JK_08810) rcrR 1717913..1718362 (+) 450 WP_003107776.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ACG3JK_RS08815 (ACG3JK_08815) rcrP 1718355..1720064 (+) 1710 WP_003107775.1 ABC transporter ATP-binding protein Regulator
  ACG3JK_RS08820 (ACG3JK_08820) - 1720064..1721848 (+) 1785 WP_013794470.1 ABC transporter ATP-binding protein -
  ACG3JK_RS08825 (ACG3JK_08825) - 1721898..1723157 (-) 1260 WP_013794469.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17278.97 Da        Isoelectric Point: 6.9820

>NTDB_id=949068 ACG3JK_RS08810 WP_003107776.1 1717913..1718362(+) (rcrR) [Streptococcus parauberis strain DB-M23]
MSRIIADLRDLTHQIEQITEEIAQAYHIDQLAGPQGHVLVFLERNQDREIFVKDIEKTLNISKSVSSNLVKRMEKNGFIE
VVPSIADKRFKQVVLTEVGKEKIPLLHECRKAIENYFFKEISKDDFMTVKHVIDQLKLNIAEYKGEKNA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=949068 ACG3JK_RS08810 WP_003107776.1 1717913..1718362(+) (rcrR) [Streptococcus parauberis strain DB-M23]
ATGTCACGTATTATTGCTGATCTTCGTGATTTGACTCATCAAATTGAACAAATCACTGAAGAAATTGCGCAAGCTTACCA
TATTGACCAGTTAGCTGGGCCTCAAGGCCATGTACTTGTTTTCTTGGAAAGAAATCAGGACCGAGAAATCTTTGTTAAAG
ATATTGAAAAAACATTAAATATCTCAAAATCAGTTTCCAGTAATTTAGTTAAACGCATGGAAAAAAATGGTTTTATTGAA
GTAGTTCCTTCAATAGCAGATAAACGTTTTAAACAAGTCGTATTAACAGAGGTTGGAAAAGAAAAGATTCCTTTGTTGCA
TGAATGCCGGAAGGCTATCGAAAATTATTTTTTCAAGGAAATATCAAAAGATGACTTTATGACAGTCAAGCATGTCATAG
ACCAGCTAAAACTAAATATTGCTGAATACAAAGGAGAGAAAAATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(32-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

93.96

0.403