Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   ACG3JK_RS03845 Genome accession   NZ_CP171738
Coordinates   784706..787969 (-) Length   1087 a.a.
NCBI ID   WP_045407189.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 779706..792969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JK_RS03835 (ACG3JK_03835) - 779837..780967 (-) 1131 WP_013793808.1 aminotransferase -
  ACG3JK_RS03840 (ACG3JK_03840) rexA 781078..784716 (-) 3639 WP_013793807.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACG3JK_RS03845 (ACG3JK_03845) rexB 784706..787969 (-) 3264 WP_045407189.1 ATP-dependent nuclease subunit B Machinery gene
  ACG3JK_RS03850 (ACG3JK_03850) - 788157..789101 (+) 945 WP_003106525.1 neutral zinc metallopeptidase -
  ACG3JK_RS03855 (ACG3JK_03855) - 789124..789792 (-) 669 WP_003106523.1 ABC transporter ATP-binding protein -
  ACG3JK_RS03860 (ACG3JK_03860) - 789801..790874 (-) 1074 WP_045407166.1 ABC transporter permease -
  ACG3JK_RS03865 (ACG3JK_03865) - 790927..791292 (-) 366 WP_003106515.1 OsmC family protein -
  ACG3JK_RS03870 (ACG3JK_03870) - 791365..791562 (-) 198 WP_231082312.1 PfkB family carbohydrate kinase -

Sequence

Protein


Download         Length: 1087 a.a.        Molecular weight: 125593.17 Da        Isoelectric Point: 4.8263

>NTDB_id=949018 ACG3JK_RS03845 WP_045407189.1 784706..787969(-) (rexB) [Streptococcus parauberis strain DB-M23]
MRLLYTDINNSLTQILVNHAQDYAQTGSKVFYIAPNSLSFEKERSVLELLDREASFDITITRFAQLARYFTLDIDNHPNT
LSDAALVMVIYRSIMQLTEDDLSVYSQLRADLTFVEQLKDLYKELKISNLSVFDISFENERKAHDLITIFTKIEEVLQAE
SLVQENPLNSLTDHIIQGHLDQELSTTVLVIDGFTRFSAEEELLVAALNDKCQEVVIGTYISKKAQAKSYIEGNLYQASL
DFMRDLSGHFQAKMEYVTSQQSFHEEFGLLSELLEAEADFTQTDKMLPAQARERIHIWQSLNQKEELEHIAKAIRQKLYQ
GHRYKDILVLLGDVEAYQAQIGPVFDKYEIPYYLGRSEAILHHPLVQFVESLERCRSYNWRREDIVNLLKSGLFGHFEKD
WVDQFEAYVEFADINGYTKFSRPFEVNSTDGNNHFRFDLEIVNQVREFSFSNLAQLFKSQKQKGLSLLEKLMTLLNAVDL
PKNFQEMMTVQDENVQERDQEVWKTFVSILEDFQLVFANEKLTLDQTLSLLKMAMQAANYRAVPATLDVVTVKSYDLVEP
HSKPFVMALGLTQNNFPKKTKNTSLISDQERSQTNEDQDYFHRFDLASQDNAKKNHFTALSLFNAATEELLLSYPLMLNE
SSEDMSTYLKSVHQYGILIEEKGKNSLSRTDLDIGNYKSLLSQLVEINRGAIEGELQEEDKNFWTVMLRYLKKRLANENL
QFPQAKNHLETKAISEEVMSLRYPEQKPISLSTSALTVFFDNQYKYFLQYVLGLQELQTIHPDARQHGTYLHKVFETIMG
DHRPIDFDQKVEDALNVTRQNNQFKHFYLEDAQGRYSLQVLEDIAKSTAGILKLNQNLKVLSQEEAFELPITQSLLVKGK
IDRIDQLVDDSIGIVDYKSSANKFDIGRFYNGLNSQLVTYLAALREKAAAMSTEEKAISIFGAMYLHLQDPKLDLKDFKQ
LDDKLVEEVYKDLTYKGIFLEDEKEKLSDGSYQTKNNLYSQEEVNQLVAFNQFLYEEAEGLIRRGHFLINPYTEDGKTVK
GDQLKAITRFESDLDMGQARQLVTLPTREKREGFLTMMKKEVSPNEL

Nucleotide


Download         Length: 3264 bp        

>NTDB_id=949018 ACG3JK_RS03845 WP_045407189.1 784706..787969(-) (rexB) [Streptococcus parauberis strain DB-M23]
ATGAGATTACTATATACTGATATAAATAATTCTTTAACACAGATTCTAGTCAACCATGCTCAAGATTATGCACAAACTGG
TAGCAAGGTTTTTTATATTGCTCCAAACTCATTATCTTTTGAAAAGGAACGATCGGTCCTAGAATTACTTGATAGAGAAG
CCTCGTTTGATATTACGATTACTCGATTTGCTCAATTGGCTCGTTATTTTACACTTGATATTGATAATCATCCTAATACA
TTGTCTGACGCAGCATTAGTGATGGTGATTTACAGAAGTATTATGCAACTTACAGAGGATGATTTATCTGTTTATAGTCA
ATTGAGAGCTGACTTAACCTTTGTCGAACAGTTAAAAGACCTTTATAAAGAATTAAAAATTTCAAATTTATCTGTATTCG
ATATTTCTTTTGAAAACGAACGTAAAGCACATGATTTAATTACTATTTTCACAAAAATTGAAGAAGTACTGCAAGCAGAA
TCCTTAGTTCAAGAGAATCCTCTTAATTCTCTAACTGACCATATAATACAAGGCCATTTAGACCAAGAGTTATCGACAAC
TGTGCTTGTTATTGATGGCTTTACCCGTTTTTCTGCAGAAGAAGAATTGTTAGTTGCAGCCTTGAACGATAAGTGTCAAG
AAGTCGTGATTGGAACCTACATCAGTAAAAAAGCACAAGCCAAATCATATATTGAAGGAAATCTTTATCAAGCCAGTTTA
GATTTTATGAGGGACTTATCTGGTCATTTTCAGGCTAAGATGGAGTATGTTACTAGTCAACAATCATTTCATGAAGAGTT
TGGTCTCTTAAGTGAATTATTGGAGGCTGAAGCGGACTTTACTCAGACCGACAAAATGTTGCCAGCGCAAGCTCGAGAGC
GGATTCATATCTGGCAATCGCTCAATCAAAAAGAGGAACTTGAGCATATCGCCAAAGCTATTCGCCAAAAGTTGTATCAG
GGTCATCGCTATAAGGACATTTTAGTTCTGTTAGGCGATGTTGAGGCTTATCAGGCGCAAATTGGTCCCGTTTTTGATAA
GTATGAGATTCCATATTATTTAGGTCGCTCGGAGGCGATTTTACATCATCCTTTGGTTCAGTTTGTAGAATCTTTGGAGA
GATGTCGTTCCTATAATTGGCGTCGGGAGGACATAGTTAACCTTTTGAAATCAGGGCTCTTTGGACATTTTGAGAAAGAC
TGGGTTGATCAGTTTGAAGCTTATGTTGAATTTGCTGATATTAATGGTTACACCAAGTTTTCACGTCCATTTGAGGTAAA
CTCAACAGATGGCAATAATCATTTTCGTTTTGATTTGGAAATAGTGAACCAGGTCAGAGAGTTTTCCTTTAGTAATTTAG
CCCAGTTATTCAAAAGTCAGAAGCAAAAAGGGCTGTCGCTTCTCGAGAAACTAATGACACTCTTAAATGCAGTCGACTTG
CCGAAGAACTTTCAAGAGATGATGACAGTGCAAGATGAAAATGTACAAGAGCGTGATCAGGAAGTCTGGAAAACCTTCGT
ATCTATTCTAGAGGATTTCCAACTAGTCTTTGCAAATGAAAAGTTGACTTTAGATCAAACCTTATCCCTTTTGAAAATGG
CTATGCAAGCTGCTAATTACCGTGCAGTTCCTGCAACATTAGATGTGGTCACTGTTAAATCTTATGATCTAGTAGAACCT
CACAGTAAGCCCTTTGTAATGGCTTTAGGATTGACTCAAAATAATTTTCCTAAGAAGACAAAAAATACCAGTCTTATTTC
TGATCAAGAAAGAAGTCAAACTAATGAAGATCAGGATTATTTCCATCGATTTGACCTTGCAAGTCAGGATAATGCCAAAA
AGAATCATTTTACGGCCTTATCATTGTTTAATGCAGCAACAGAAGAATTACTTTTAAGCTATCCGCTGATGTTAAATGAG
TCCTCTGAGGATATGTCTACTTATCTGAAATCAGTTCATCAATATGGTATTCTGATTGAAGAAAAAGGGAAAAATAGTCT
GTCACGAACTGACTTAGATATTGGTAACTATAAGTCCTTGTTATCACAACTCGTTGAAATAAATCGTGGTGCTATTGAAG
GTGAATTGCAAGAAGAAGATAAAAATTTCTGGACAGTTATGCTTCGTTACTTAAAGAAACGCCTTGCAAATGAAAATCTT
CAGTTTCCACAAGCAAAGAATCATTTGGAAACTAAGGCTATTAGTGAAGAAGTCATGTCATTAAGGTATCCTGAGCAAAA
ACCAATATCACTTTCAACATCAGCCTTGACTGTCTTTTTTGATAATCAATACAAATATTTCTTGCAATATGTTCTTGGTC
TGCAAGAATTGCAAACTATCCATCCAGATGCTCGCCAACACGGTACCTATTTACACAAAGTATTTGAAACAATTATGGGC
GATCATCGTCCAATTGATTTTGACCAGAAGGTAGAGGATGCCTTAAATGTAACACGTCAAAACAATCAATTTAAACATTT
TTATTTGGAAGATGCGCAGGGCAGATACAGTTTACAAGTTTTAGAAGATATCGCAAAATCAACTGCAGGCATTCTAAAAC
TTAATCAGAATCTTAAAGTCTTAAGTCAGGAAGAAGCATTTGAATTGCCAATTACTCAGTCCTTATTAGTCAAAGGTAAA
ATTGATAGGATTGATCAACTTGTTGATGATAGTATTGGTATTGTTGATTACAAGTCAAGTGCTAACAAATTTGACATCGG
CCGTTTTTACAATGGCTTAAATTCACAGCTAGTCACCTATTTAGCAGCCTTAAGAGAAAAAGCGGCAGCCATGTCGACAG
AAGAAAAAGCGATTTCTATTTTTGGTGCTATGTACTTACATTTACAAGATCCTAAATTAGATTTAAAAGATTTTAAACAG
TTGGATGATAAATTAGTTGAGGAAGTATACAAAGATTTAACTTATAAAGGTATTTTCTTAGAAGATGAAAAAGAGAAGCT
TTCAGACGGTTCCTACCAAACTAAAAATAACTTGTATAGCCAAGAAGAAGTAAATCAATTAGTCGCCTTTAATCAATTTC
TCTATGAGGAAGCTGAAGGTTTGATTCGTAGAGGTCATTTCTTGATTAATCCATATACAGAGGATGGAAAAACTGTTAAG
GGAGATCAACTAAAAGCAATTACAAGGTTTGAATCTGATCTTGATATGGGTCAAGCTCGTCAATTAGTGACCCTTCCGAC
TAGAGAAAAAAGGGAAGGATTTTTAACCATGATGAAAAAGGAGGTGAGTCCAAATGAACTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(750-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

40.888

99.448

0.407