Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WDW95_RS09710 Genome accession   NZ_CP147857
Coordinates   1959006..1959515 (-) Length   169 a.a.
NCBI ID   WP_096039601.1    Uniprot ID   A0A290PXP2
Organism   Lactococcus raffinolactis strain APC3967     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1954006..1964515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW95_RS09675 - 1954359..1954613 (-) 255 WP_061775372.1 DUF1912 family protein -
  WDW95_RS09680 - 1954657..1955154 (-) 498 WP_061775371.1 GNAT family N-acetyltransferase -
  WDW95_RS09685 rlmD 1955151..1956488 (-) 1338 WP_138492480.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  WDW95_RS09690 recX 1956525..1957319 (+) 795 WP_096039599.1 recombination regulator RecX -
  WDW95_RS09695 - 1957346..1958059 (-) 714 WP_368651528.1 pseudouridine synthase -
  WDW95_RS09700 - 1958225..1958536 (+) 312 WP_061775367.1 DUF960 domain-containing protein -
  WDW95_RS09705 rpsR 1958712..1958957 (-) 246 WP_003140392.1 30S ribosomal protein S18 -
  WDW95_RS09710 ssb 1959006..1959515 (-) 510 WP_096039601.1 single-stranded DNA-binding protein Machinery gene
  WDW95_RS09715 rpsF 1959552..1959851 (-) 300 WP_061775365.1 30S ribosomal protein S6 -
  WDW95_RS09720 - 1960047..1960358 (-) 312 WP_096039602.1 hypothetical protein -
  WDW95_RS09725 - 1960500..1960844 (-) 345 WP_167372301.1 hypothetical protein -
  WDW95_RS09730 - 1960855..1961508 (-) 654 WP_138492477.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18385.25 Da        Isoelectric Point: 4.8895

>NTDB_id=949010 WDW95_RS09710 WP_096039601.1 1959006..1959515(-) (ssb) [Lactococcus raffinolactis strain APC3967]
MINNVVLVGRLTKDVELRYTPANQAVATFTLAVNRAFKNANGEREADFINVVIWRQAAENLANWAKKGALLGVTGRIQTR
NYENAQGQRVYVTEVVADNFQMLESRSAREGGQQGGGYTPSQSQPTNSNFGGNQPSQTQSSPAIPDFGRDSDPFSGGTPM
NLSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=949010 WDW95_RS09710 WP_096039601.1 1959006..1959515(-) (ssb) [Lactococcus raffinolactis strain APC3967]
ATGATTAATAATGTTGTTTTAGTAGGTCGTTTGACCAAAGACGTTGAACTTCGTTACACACCTGCCAATCAAGCAGTGGC
TACTTTTACCCTTGCGGTTAATCGTGCCTTCAAAAATGCTAATGGTGAGCGTGAAGCAGATTTCATTAATGTTGTCATCT
GGCGTCAAGCTGCAGAAAATCTAGCAAATTGGGCGAAAAAAGGTGCGCTTCTGGGCGTTACTGGTCGTATCCAAACGCGT
AATTATGAGAATGCTCAAGGTCAACGTGTTTACGTGACTGAAGTGGTTGCTGATAATTTCCAAATGTTAGAAAGTCGTAG
CGCGCGCGAAGGTGGTCAACAAGGTGGTGGTTACACACCTTCACAGTCTCAACCTACAAACTCAAACTTCGGTGGCAATC
AACCGTCACAAACTCAGAGCTCACCTGCCATTCCAGACTTTGGCCGCGATAGCGATCCGTTTTCTGGTGGCACACCCATG
AACTTGAGTGATGATGATCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290PXP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.429

100

0.615
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.114

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379
  ssb Vibrio cholerae strain A1552

34.239

100

0.373
  ssb Glaesserella parasuis strain SC1401

32.632

100

0.367