Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   WDW95_RS03185 Genome accession   NZ_CP147857
Coordinates   647216..649504 (+) Length   762 a.a.
NCBI ID   WP_368651721.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain APC3967     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 642216..654504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW95_RS03175 dnaG 643991..645844 (+) 1854 WP_167841157.1 DNA primase -
  WDW95_RS03180 rpoD 645847..646977 (+) 1131 WP_096040207.1 RNA polymerase sigma factor RpoD -
  WDW95_RS03185 clpC 647216..649504 (+) 2289 WP_368651721.1 AAA family ATPase Regulator
  WDW95_RS03190 def 649594..650214 (-) 621 WP_368651722.1 peptide deformylase -
  WDW95_RS03195 uvrB 650286..652274 (+) 1989 WP_061775387.1 excinuclease ABC subunit UvrB -
  WDW95_RS03200 - 652754..653041 (+) 288 WP_061775386.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 762 a.a.        Molecular weight: 84080.84 Da        Isoelectric Point: 4.7067

>NTDB_id=948990 WDW95_RS03185 WP_368651721.1 647216..649504(+) (clpC) [Lactococcus raffinolactis strain APC3967]
MLCQNCQLNEATIHLYTNVNGVKKQNDLCQNCYQIMKSGGPTNLFGGGANQGATNQSDANYNPFDDLFGTLGNNMNHPNG
RPDNATPPTQTGRGGNGGQPPRGRAGNAQPKGMLEDFGFNVTESARKGEIDPVIGRDQEITRVIEILNRRTKNNPVLIGE
PGVGKTAVVEGLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGIRGQFEERMQKLMKEISDRQDVILFIDEIHEIVGAGS
AGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYTDE
AIEQAAILSNRYIQDRFLPDKAIDLLDESGSKKNLTLKFVDPQEIAKRIQSSEDAKNEALRSEDFEKAAHFRDQIAKLRE
LSKQELTDEETPVITEKDIESIIEEKTKIPVGDLKEKEQTQLINLADDLKAHVIGQDDAIDKISKAVRRNRVGLGKANRP
IGSFMFVGPTGVGKTELAKQLALELFGSQDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTEKVRRNPYSLILLD
EIEKAHPDVMHMFLQILDDGRLTDAQGRTISFKDTIIIMTSNAGTGKVEANVGFGAAREGTTNSVLGQLGDFFSPEFMNR
FDGIIEFKALSKDNLLQIVDLMLADVNAQISRNEIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDHIEDAIADFYIEY
PEHKMLTADVIDDQIVIVNQSDDATTDGAIAETTADAGSADA

Nucleotide


Download         Length: 2289 bp        

>NTDB_id=948990 WDW95_RS03185 WP_368651721.1 647216..649504(+) (clpC) [Lactococcus raffinolactis strain APC3967]
ATGCTCTGTCAAAATTGTCAGCTTAATGAAGCAACGATTCACCTCTACACAAATGTAAATGGTGTCAAAAAACAAAATGA
TCTCTGCCAAAACTGTTACCAAATCATGAAATCAGGTGGACCTACAAATCTTTTTGGTGGTGGTGCTAACCAAGGCGCAA
CCAATCAATCAGATGCTAACTATAATCCCTTCGATGATCTTTTCGGAACATTAGGTAATAATATGAACCATCCTAATGGC
CGACCAGACAATGCTACACCGCCAACACAGACTGGTCGTGGTGGTAATGGTGGTCAACCACCTCGTGGTCGTGCAGGAAA
CGCACAACCCAAAGGTATGCTAGAAGACTTCGGTTTTAACGTGACTGAAAGTGCCCGTAAAGGTGAAATTGACCCAGTCA
TTGGACGTGATCAGGAAATTACTCGCGTGATTGAAATTCTCAATCGCCGGACTAAAAATAATCCTGTTTTAATTGGCGAA
CCTGGTGTTGGTAAAACTGCTGTCGTTGAAGGCTTAGCCCAAAAAATCGTTGATGGTGATGTGCCACAAAAACTACAAAA
TAAAGAAGTTATTCGACTAGATGTTGTGAGTTTGGTTCAAGGGACAGGGATTCGTGGTCAATTTGAAGAGCGCATGCAAA
AATTGATGAAAGAAATCTCTGACCGTCAAGATGTGATTCTTTTCATCGATGAAATCCATGAAATCGTGGGTGCTGGGTCT
GCTGGCGATGGTAATATGGATGCTGGCAACATTTTGAAGCCAGCATTGGCTCGTGGTGAATTGCAGCTGGTCGGTGCAAC
AACGCTAAATGAATATCGGATCATTGAAAAAGATGCTGCGCTTGAACGTCGGATGCAACCAGTTAAAGTTGATGAACCTT
CTGTTGATGAAACGATTACTATTTTACGCGGGATTCAAAAACGTTATGAAGACTACCATCACGTGAAATATACGGATGAA
GCGATTGAACAGGCAGCCATCTTGTCTAACCGTTATATTCAAGATCGTTTCTTGCCTGACAAGGCCATTGACTTGTTAGA
TGAGTCTGGATCTAAGAAAAATCTGACCTTAAAATTCGTTGATCCTCAGGAAATTGCCAAACGGATTCAGTCTTCTGAAG
ATGCCAAAAATGAAGCCTTGCGTTCTGAAGACTTCGAAAAAGCAGCACATTTCCGTGATCAAATCGCCAAATTGCGAGAA
TTATCTAAGCAAGAATTGACGGATGAAGAAACACCAGTCATCACTGAAAAAGACATCGAATCTATCATTGAAGAAAAAAC
GAAGATTCCTGTAGGTGATTTGAAAGAAAAAGAACAAACGCAGTTGATCAATTTAGCCGATGACTTGAAAGCGCATGTCA
TTGGTCAAGATGATGCCATTGATAAAATTTCCAAGGCAGTCCGTCGTAACCGTGTAGGCCTTGGGAAAGCCAATCGCCCA
ATCGGTAGCTTTATGTTTGTCGGACCAACGGGTGTTGGTAAAACAGAACTTGCTAAGCAATTAGCCCTGGAGCTTTTCGG
TAGTCAAGACAGCATGATTCGATTCGATATGAGCGAATACATGGAAAAACACAGTGTGGCGAAGCTGATTGGTGCGCCTC
CTGGTTATGTTGGTTATGAAGAAGCAGGGCAACTGACTGAAAAAGTCCGTCGCAATCCTTATTCATTGATCTTACTGGAC
GAAATCGAAAAAGCCCATCCAGATGTTATGCACATGTTCTTACAAATCTTGGACGACGGTCGTCTGACCGATGCTCAAGG
TCGTACGATTAGCTTTAAGGACACGATTATCATCATGACCTCAAATGCAGGGACTGGTAAAGTAGAAGCCAATGTCGGCT
TCGGTGCAGCTCGTGAAGGCACGACAAACTCTGTCTTAGGTCAACTTGGTGATTTCTTCAGCCCTGAGTTCATGAACCGT
TTTGACGGCATCATTGAATTCAAAGCCTTAAGTAAAGACAATCTCCTGCAAATTGTTGACTTGATGCTGGCTGACGTTAA
TGCACAGATTTCAAGAAATGAAATCCATTTGGACGTAACTCAAGCAGTCAAAGAAAAATTAGTTGATCTTGGTTATGATC
CGAAAATGGGCGCTCGACCACTCCGCCGGACTATCCAAGACCATATCGAAGATGCCATCGCAGATTTTTATATCGAATAT
CCCGAACATAAAATGCTTACAGCAGACGTCATTGATGATCAAATCGTCATTGTCAATCAGTCTGATGACGCAACAACGGA
TGGAGCTATAGCAGAAACAACAGCTGATGCAGGCTCTGCTGACGCTTAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(156-275)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(650-719)

AAA lid domain (AAA_lid_9)

(294-393)

AAA domain (Cdc48 subfamily) (AAA_2)

(479-642)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

83.222

98.556

0.82
  clpE Streptococcus mutans UA159

76.078

100

0.764
  clpE Streptococcus pneumoniae Rx1

75.806

97.638

0.74
  clpE Streptococcus pneumoniae D39

75.806

97.638

0.74
  clpE Streptococcus pneumoniae R6

75.806

97.638

0.74
  clpE Streptococcus pneumoniae TIGR4

75.806

97.638

0.74
  clpC Bacillus subtilis subsp. subtilis str. 168

50.223

88.32

0.444
  clpC Streptococcus pneumoniae Rx1

48.232

81.627

0.394
  clpC Streptococcus pneumoniae TIGR4

48.232

81.627

0.394
  clpC Streptococcus pneumoniae D39

48.232

81.627

0.394
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.987

81.496

0.391
  clpC Streptococcus thermophilus LMD-9

44.932

86.745

0.39
  clpC Streptococcus thermophilus LMG 18311

44.629

86.745

0.387
  clpC Streptococcus mutans UA159

46.667

80.709

0.377