Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   WDW95_RS01575 Genome accession   NZ_CP147857
Coordinates   310411..312183 (+) Length   590 a.a.
NCBI ID   WP_061773761.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain APC3967     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 305411..317183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW95_RS01555 - 305576..306409 (+) 834 WP_061773757.1 carbohydrate ABC transporter permease -
  WDW95_RS01560 - 306624..308291 (+) 1668 WP_368651662.1 glycoside hydrolase family 43 protein -
  WDW95_RS01565 - 308544..309734 (+) 1191 WP_061773759.1 iron-containing alcohol dehydrogenase -
  WDW95_RS01570 - 309885..310340 (+) 456 WP_061773760.1 MarR family winged helix-turn-helix transcriptional regulator -
  WDW95_RS01575 rcrP 310411..312183 (+) 1773 WP_061773761.1 ABC transporter ATP-binding protein Regulator
  WDW95_RS01580 rcrQ 312183..314048 (+) 1866 WP_061773762.1 ABC transporter ATP-binding protein Regulator
  WDW95_RS01585 - 314184..314405 (+) 222 WP_368651663.1 tyrosine-protein phosphatase -
  WDW95_RS01590 - 314386..314931 (+) 546 WP_368651664.1 tyrosine-protein phosphatase -
  WDW95_RS01595 - 315205..315612 (+) 408 WP_368651665.1 hypothetical protein -
  WDW95_RS01600 - 315677..316033 (+) 357 WP_061773765.1 hypothetical protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64855.43 Da        Isoelectric Point: 9.0892

>NTDB_id=948978 WDW95_RS01575 WP_061773761.1 310411..312183(+) (rcrP) [Lactococcus raffinolactis strain APC3967]
MLKILKKITGKELRYVGISLIFIVIQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDEGRWMVLCAFGSLVAAVIVGFFAA
KVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMIVAMGLQLSIKAPITAVWAIMKIANKSWEWTTA
LGAAVLFLLVMISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIRVVRAYNAQKYQTDKFEKANDDITSTNLFIQRAMAF
MMPMMSLVSSGLSVAVYLIGATIIKAASVGTPANSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMFPRANVSAGRINE
VIDTASSIKNGTKDGSAAKEVGTVEFKNVYFQYADASEHVLEGVSFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKEYTEEALHDKMGFIPQKPVMFNGTIRSNLAFGTNAHGDMSDEDLMAAARIAQAEEFILKNPEGLNAEVSQ
GGLNLSGGQKQRLAIARAIARKPEILVFDDSFSALDYKTDRVLRDTLKRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGRGTHDELMASNEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=948978 WDW95_RS01575 WP_061773761.1 310411..312183(+) (rcrP) [Lactococcus raffinolactis strain APC3967]
ATGCTTAAAATCTTAAAAAAAATCACTGGAAAAGAGCTCAGATACGTCGGTATCAGCTTGATTTTCATTGTCATCCAGGT
GTATTTAGACCTTAAATTACCGGATTACATGAGCAAAGTGACCAAATTAATCCAAGAGAAAGGCACAACCGTGTCGCAAA
TCTTTGATGAAGGTCGCTGGATGGTCCTCTGTGCCTTTGGCTCACTCGTCGCCGCAGTCATTGTCGGCTTCTTTGCTGCC
AAGGTAGCCGCTGGCTTATCACGGACGCTGCGTCATGATGTCTACCATCAAGTCTCAGAGTATTCAATGGCTGAAATCAA
CCAGTTTTCAACTGCCAGCCTGATTACCCGTTCGACCAACGACATTACTCAAGTCCAAATGATCGTGGCTATGGGGCTAC
AACTCAGTATCAAAGCACCGATTACTGCCGTTTGGGCTATCATGAAAATTGCCAACAAATCATGGGAATGGACGACTGCT
TTAGGTGCTGCTGTTCTCTTCCTTCTCGTCATGATCAGTATTATCGTGACGCTTGCCATGCCACGCTTCAAGATTATCCA
AAAATTAACGGATAAACTAAATTCCGTGACCCGTGAAAACCTGACTGGGATTCGTGTGGTCCGTGCTTATAACGCTCAAA
AATATCAAACTGATAAATTTGAAAAAGCCAACGACGATATTACGTCAACCAACCTCTTCATTCAACGCGCAATGGCCTTC
ATGATGCCCATGATGTCTCTTGTGTCATCTGGCCTGTCAGTTGCCGTTTACTTGATTGGTGCGACCATTATTAAAGCTGC
AAGCGTTGGGACACCTGCTAATTCACCTCGGATCAATCTCTTTTCAGACATGGTCGTGTTCACGTCTTATGGAATGCAAG
TTGTGATGGCCTTTATGATGTTGACCATGATTTTCATCATGTTCCCGCGTGCCAATGTCTCTGCTGGTCGGATTAATGAA
GTCATCGATACCGCCTCAAGCATTAAAAACGGGACAAAAGATGGTTCAGCAGCTAAAGAAGTTGGGACTGTCGAGTTTAA
GAACGTCTATTTCCAATACGCTGATGCCTCTGAACACGTTCTTGAAGGTGTTTCTTTCAAGGCCAATAAAGGCGAAACGG
TTGCCTTCATCGGCTCAACCGGTTCTGGTAAATCAACATTAATCAACCTCATCCCGCGTTACTATGATGTGACAGCCGGT
CAAGTCTTGGTTGATGGCGTCAATGTTAAGGAATATACAGAAGAAGCCTTGCACGATAAAATGGGTTTCATCCCGCAAAA
ACCAGTGATGTTTAACGGAACGATTCGGTCAAACTTGGCCTTTGGGACTAATGCTCATGGTGACATGAGTGATGAAGACT
TAATGGCAGCTGCACGGATCGCCCAAGCTGAAGAATTTATACTGAAAAACCCTGAAGGCTTAAACGCTGAAGTATCTCAG
GGTGGTCTTAACCTGTCCGGTGGTCAAAAGCAACGGCTAGCGATTGCTCGTGCCATTGCCCGCAAGCCTGAAATTCTCGT
CTTTGATGACAGTTTTTCAGCTTTGGACTATAAGACTGACCGTGTCTTACGCGATACCTTGAAACGTGAAACAGCAGAAA
CGACGAAACTGATTGTTGCCCAACGGATTGGCACGATTATCGATGCCGATCAAATTATTGTTTTGGATAAAGGGAAAGTC
GTGGGTCGTGGGACACATGATGAGTTGATGGCTAGCAATGAAGTCTATCAAGAAATCGCCTATTCACAACTGTCTAAGGA
GGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-511)

ABC transporter transmembrane region (ABC_membrane)

(17-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.017

100

0.558