Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   WDW95_RS00780 Genome accession   NZ_CP147857
Coordinates   136642..137700 (+) Length   352 a.a.
NCBI ID   WP_167841744.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain APC3967     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 131642..142700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW95_RS00765 rsmD 135186..135752 (+) 567 WP_368651612.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WDW95_RS00770 - 135715..136176 (+) 462 WP_138491838.1 ASCH domain-containing protein -
  WDW95_RS00775 coaD 136173..136655 (+) 483 WP_061773606.1 pantetheine-phosphate adenylyltransferase -
  WDW95_RS00780 sepM 136642..137700 (+) 1059 WP_167841744.1 SepM family pheromone-processing serine protease Regulator
  WDW95_RS00785 - 137984..139216 (+) 1233 WP_138491840.1 GHKL domain-containing protein -
  WDW95_RS00790 - 139523..140236 (+) 714 WP_167841745.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38014.94 Da        Isoelectric Point: 9.5349

>NTDB_id=948974 WDW95_RS00780 WP_167841744.1 136642..137700(+) (sepM) [Lactococcus raffinolactis strain APC3967]
MIKSKKSFIKKRWAIASLVGILVFLGVLLPLPYYVEMPGTTENVGEMIKVNQTLLHQKSEEGALNLTTVSMMRATGASLI
YAALTDFTDVYSKKDMMGNQTDADYNRMNAFYMASAQNAATYEAFKLAGKPFELDYKGVYVLDVLKKSTFKGVLHIADTV
TGVNGQSFKSSEELMTYIKSQKIGAKISVQYTDEAGKAKSADGKTIKIADGKAGIGITLVDHTEVKSTPSVTIDAGAIGG
PSAGMMFTLEIYSQLTGQDLTKGREIAGTGTIEKDGKIGRIGGIDKKIATASRNGAQIFLAPDDEITPEMKKVEPGVKSN
YQEALAAAKKLNTKMKIVPVKTVQDAIDYLKE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=948974 WDW95_RS00780 WP_167841744.1 136642..137700(+) (sepM) [Lactococcus raffinolactis strain APC3967]
TTGATCAAAAGTAAAAAGTCATTTATAAAAAAACGCTGGGCTATTGCTAGTCTTGTTGGTATCCTAGTTTTTCTTGGTGT
TTTGCTCCCCCTACCCTACTATGTTGAGATGCCTGGCACGACTGAAAATGTTGGTGAGATGATAAAAGTCAATCAGACAC
TATTGCACCAAAAATCAGAAGAAGGGGCTTTGAATTTGACGACTGTTTCGATGATGCGGGCAACGGGTGCGAGCTTGATT
TATGCTGCATTGACGGATTTTACCGATGTTTACAGTAAAAAAGACATGATGGGTAACCAGACGGATGCTGATTACAATCG
GATGAATGCTTTTTACATGGCAAGTGCTCAGAATGCTGCAACCTACGAGGCATTTAAGTTGGCGGGGAAACCCTTTGAGT
TAGATTATAAAGGTGTTTATGTCCTCGATGTGCTGAAGAAATCGACGTTTAAAGGTGTTTTGCATATCGCGGATACAGTG
ACAGGTGTCAATGGGCAAAGTTTTAAATCATCTGAGGAGCTGATGACCTACATCAAGTCCCAAAAGATTGGGGCTAAGAT
TTCAGTTCAGTATACAGATGAAGCGGGTAAGGCAAAATCGGCAGACGGCAAAACGATTAAGATCGCAGATGGTAAAGCTG
GAATTGGGATTACCTTGGTGGATCATACGGAGGTTAAGAGTACGCCATCTGTGACAATTGATGCGGGGGCGATTGGTGGC
CCATCTGCAGGGATGATGTTTACGCTTGAAATCTATTCCCAATTGACGGGCCAAGATTTAACGAAAGGTCGGGAGATTGC
GGGTACAGGTACGATTGAAAAAGATGGGAAAATCGGTCGAATTGGCGGTATTGATAAAAAAATCGCCACTGCCAGTCGCA
ATGGTGCTCAAATTTTTCTAGCGCCTGATGATGAGATAACCCCAGAGATGAAGAAAGTCGAGCCTGGTGTTAAGTCAAAC
TATCAAGAAGCATTGGCTGCAGCTAAAAAACTGAATACAAAGATGAAAATTGTCCCAGTGAAAACAGTGCAGGATGCAAT
TGACTATTTGAAAGAATAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(135-192)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(231-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

51.282

99.716

0.511