Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WDR10_RS13130 Genome accession   NZ_CP147847
Coordinates   2633520..2634476 (-) Length   318 a.a.
NCBI ID   WP_068450486.1    Uniprot ID   A0A0X1RZM6
Organism   Kurthia gibsonii strain ND2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2628520..2639476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR10_RS13105 (WDR10_13105) - 2628930..2629529 (-) 600 WP_068450501.1 phosphatase PAP2 family protein -
  WDR10_RS13110 (WDR10_13110) solA 2629640..2630764 (+) 1125 WP_338838281.1 N-methyl-L-tryptophan oxidase -
  WDR10_RS13115 (WDR10_13115) - 2630813..2631802 (-) 990 WP_338838282.1 siderophore ABC transporter substrate-binding protein -
  WDR10_RS13120 (WDR10_13120) - 2631819..2632583 (-) 765 WP_338838283.1 ATP-binding cassette domain-containing protein -
  WDR10_RS13125 (WDR10_13125) - 2632580..2633533 (-) 954 WP_087681087.1 iron chelate uptake ABC transporter family permease subunit -
  WDR10_RS13130 (WDR10_13130) ceuB 2633520..2634476 (-) 957 WP_068450486.1 ABC transporter permease Machinery gene
  WDR10_RS13135 (WDR10_13135) - 2634797..2636284 (-) 1488 WP_068450485.1 peptide MFS transporter -
  WDR10_RS13140 (WDR10_13140) hflX 2636593..2637864 (-) 1272 WP_338838284.1 GTPase HflX -
  WDR10_RS13145 (WDR10_13145) - 2638100..2638804 (-) 705 WP_068450481.1 VOC family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35106.56 Da        Isoelectric Point: 10.3058

>NTDB_id=948968 WDR10_RS13130 WP_068450486.1 2633520..2634476(-) (ceuB) [Kurthia gibsonii strain ND2]
MKKRYLFIALILLSLLSLFVGVSRISPMDLLDFGSEETQIFLISRVPRLVAIILAGVGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGILVSMMIFVNATLLERMVVAFVFALAGTLLFMQILNRIKFKDAIFIPLIGMMFGNILNSITTFFAYKMNII
QNLSTWLQGDFSTILKGRYELLYISVPILIIAYFYANRFTVAGMGEDFAKNLGIKYKRIVNFGLVLVALISTSVVLTVGV
IPFVGLIIPNIVSIFKGDNLAKTLPHTALLGAIFLLICDILGRVLIYPYEISISLMVGVIGSAIFLYLLMRGRAYAQQ

Nucleotide


Download         Length: 957 bp        

>NTDB_id=948968 WDR10_RS13130 WP_068450486.1 2633520..2634476(-) (ceuB) [Kurthia gibsonii strain ND2]
ATGAAGAAAAGATATCTTTTTATAGCGCTTATATTGTTATCACTTCTTTCATTATTTGTAGGAGTGAGTCGCATATCACC
AATGGACTTACTGGACTTCGGTTCAGAAGAGACACAAATCTTTTTGATTAGTCGTGTACCAAGACTTGTAGCGATCATCT
TAGCAGGTGTAGGGATGAGTATTGCAGGTTTAATCATGCAAAGCTTGAGCCGTAATAAGTTCGTATCACCAACTACTGCT
GGTACGCTCGATGCAACCAAACTTGGTATTTTAGTATCCATGATGATTTTTGTGAATGCAACCCTACTTGAGAGAATGGT
CGTTGCTTTTGTATTCGCGCTAGCCGGCACGCTATTATTCATGCAAATTTTAAATCGAATCAAATTTAAAGACGCCATTT
TTATTCCTTTAATCGGGATGATGTTTGGTAATATTCTAAATTCAATTACGACATTCTTTGCGTATAAGATGAATATTATT
CAAAACTTATCAACTTGGCTACAAGGGGATTTCTCAACGATTCTGAAAGGTCGTTATGAACTTCTTTACATAAGTGTTCC
GATTCTCATCATTGCCTATTTTTATGCCAACCGTTTTACAGTTGCAGGAATGGGAGAAGACTTTGCTAAAAACTTAGGGA
TTAAATACAAACGTATTGTAAACTTTGGTTTAGTGTTAGTGGCACTTATTTCAACATCTGTTGTATTAACAGTTGGTGTG
ATTCCATTCGTTGGATTAATCATTCCAAATATCGTCTCGATTTTCAAAGGCGATAACTTAGCGAAAACATTGCCGCATAC
TGCTTTACTAGGCGCGATTTTCCTACTCATTTGTGACATTTTAGGTCGAGTGCTCATCTATCCATATGAAATCTCAATCA
GTCTCATGGTAGGCGTCATCGGTAGTGCCATCTTCCTTTATCTATTAATGAGGGGGCGAGCATATGCGCAACAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X1RZM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.443

96.541

0.506