Detailed information NTG0948925

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACG3JL_RS03590
• Genome accession: NZ_CP171737
• Coordinates: 682876..683985 (+)
• Length: 369 a.a.
• NCBI ID: WP_003105447.1
• Uniprot ID: A0ABN0ITI9
• Organism: Streptococcus parauberis strain DB-M18
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 677876..688985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JL_RS03565 (ACG3JL_03565)	-	678179..679309 (+)	1131	WP_013793808.1	aminotransferase	-
ACG3JL_RS03570 (ACG3JL_03570)	-	679324..680136 (+)	813	WP_003104103.1	transporter substrate-binding domain-containing protein	-
ACG3JL_RS03575 (ACG3JL_03575)	rpsU	680264..680440 (+)	177	WP_000048058.1	30S ribosomal protein S21	-
ACG3JL_RS03580 (ACG3JL_03580)	mscL	680549..680929 (-)	381	WP_003104850.1	large conductance mechanosensitive channel protein MscL	-
ACG3JL_RS03585 (ACG3JL_03585)	dnaG	681056..682867 (+)	1812	WP_003106531.1	DNA primase	-
ACG3JL_RS03590 (ACG3JL_03590)	rpoS	682876..683985 (+)	1110	WP_003105447.1	RNA polymerase sigma factor RpoD	Regulator
ACG3JL_RS03595 (ACG3JL_03595)	-	684139..684477 (+)	339	WP_013793810.1	metal-sulfur cluster assembly factor	-
ACG3JL_RS03600 (ACG3JL_03600)	rfbD	684569..685420 (+)	852	WP_003103693.1	dTDP-4-dehydrorhamnose reductase	-
ACG3JL_RS03605 (ACG3JL_03605)	cps2T	685536..686690 (+)	1155	WP_013793811.1	beta 1-4 rhamnosyltransferase Cps2T	-
ACG3JL_RS03610 (ACG3JL_03610)	-	686680..687612 (+)	933	WP_003105744.1	glycosyltransferase family 2 protein	-
ACG3JL_RS03615 (ACG3JL_03615)	-	687616..688419 (+)	804	WP_003103004.1	ABC transporter permease	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42201.87 Da
• Isoelectric Point: 4.4893

>NTDB_id=948925 ACG3JL_RS03590 WP_003105447.1 682876..683985(+) (rpoS) [Streptococcus parauberis strain DB-M18]
MAKENDITTFNVQVADFIRNHKKEGSAVDDEITEKLVIPFVLDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEQLIGSNSAKVNDPVRMYLKEIGVVPLLTGEEEKELAVAVDEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=948925 ACG3JL_RS03590 WP_003105447.1 682876..683985(+) (rpoS) [Streptococcus parauberis strain DB-M18]
ATGGCCAAAGAAAACGATATTACAACTTTTAACGTTCAAGTTGCAGATTTTATTCGTAATCATAAAAAAGAAGGATCTGC
AGTTGATGATGAAATTACAGAAAAATTAGTTATCCCATTCGTTTTAGATGCTGACCAAATTGATGATTTATTAGAACGCC
TGACTGATGGCGGTATTTCTATCACAGATAAAGAAGGAAATCCTTCATCTAAATATGTTGTTGAAGAACCAAAACCTGAA
GAACTTACAGATGAGCAATTAATCGGAAGTAATTCAGCTAAGGTAAATGATCCAGTTCGTATGTACTTGAAAGAAATTGG
GGTTGTTCCACTATTAACTGGTGAAGAAGAAAAAGAATTAGCAGTAGCTGTTGATGAAGGCGATTTAGAAGCTAAACAAC
GTCTGGCTGAAGCTAATTTACGTCTTGTAGTATCTATTGCTAAACGCTATGTTGGTCGTGGCATGCAATTTTTGGATTTA
ATTCAAGAAGGTAATATGGGTCTTATGAAAGCAGTTGATAAGTTTGACTATTCTAAAGGTTTTAAATTTTCAACTTATGC
AACATGGTGGATTCGCCAAGCAATTACACGTGCCATCGCCGACCAAGCACGTACTATTCGTATTCCAGTACATATGGTCG
AAACGATTAATAAATTAGTTAGAGAACAACGTAATTTGTTACAAGAATTAGGACAAGACCCAACGCCAGAACAAATTGCT
GAGCGCATGGAAATGACACCTGATAAAGTACGTGAAATTCTAAAAATTGCTCAAGAACCTGTTTCACTTGAAACTCCTAT
TGGTGAAGAAGATGATAGCCATCTTGGTGATTTTATTGAAGATGAAGTGATTGAAAATCCAGTAGATTATACAACACGTG
TTGTTTTACGTGAACAATTAGATGAAGTTTTAGATACATTAACTGACCGTGAAGAAAATGTATTGAGACTACGTTTTGGT
CTTGATGATGGGAAAATGCGTACTTTAGAAGATGTTGGTAAAGTTTTCAACGTTACAAGAGAGCGTATCCGTCAAATTGA
AGCCAAAGCACTCCGCAAACTCCGCCACCCAAGCAGAAGCAAACAATTAAGAGACTTTATTGAGGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-84)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363