Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8569_RS05825 Genome accession   NZ_AP028413
Coordinates   1143182..1143676 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain IDH-12448     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1138182..1148676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8569_RS05810 (I12448_11360) - 1139568..1140746 (-) 1179 WP_002877097.1 metal-dependent hydrolase -
  R8569_RS05815 (I12448_11370) gpsA 1140756..1141652 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8569_RS05820 (I12448_11380) gatB 1141649..1143067 (-) 1419 WP_002868575.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8569_RS05825 (I12448_11390) luxS 1143182..1143676 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  R8569_RS05830 (I12448_11400) - 1143988..1144980 (+) 993 WP_002882217.1 isopenicillin N synthase family dioxygenase -
  R8569_RS05835 (I12448_11410) - 1144991..1145761 (+) 771 WP_002882216.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8569_RS05840 (I12448_11420) metE 1145773..1148037 (+) 2265 WP_317648113.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=94886 R8569_RS05825 WP_002860433.1 1143182..1143676(+) (luxS) [Campylobacter jejuni strain IDH-12448]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=94886 R8569_RS05825 WP_002860433.1 1143182..1143676(+) (luxS) [Campylobacter jejuni strain IDH-12448]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGTATACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment