Detailed information NTG0948830

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACG3JE_RS03615
• Genome accession: NZ_CP171736
• Coordinates: 682779..683888 (+)
• Length: 369 a.a.
• NCBI ID: WP_003105447.1
• Uniprot ID: A0ABN0ITI9
• Organism: Streptococcus parauberis strain DB-M17
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 677779..688888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JE_RS03590 (ACG3JE_03590)	-	678083..679213 (+)	1131	WP_013793808.1	aminotransferase	-
ACG3JE_RS03595 (ACG3JE_03595)	-	679228..680040 (+)	813	WP_003104103.1	transporter substrate-binding domain-containing protein	-
ACG3JE_RS03600 (ACG3JE_03600)	rpsU	680168..680344 (+)	177	WP_000048058.1	30S ribosomal protein S21	-
ACG3JE_RS03605 (ACG3JE_03605)	mscL	680452..680832 (-)	381	WP_003104850.1	large conductance mechanosensitive channel protein MscL	-
ACG3JE_RS03610 (ACG3JE_03610)	dnaG	680959..682770 (+)	1812	WP_003106531.1	DNA primase	-
ACG3JE_RS03615 (ACG3JE_03615)	rpoS	682779..683888 (+)	1110	WP_003105447.1	RNA polymerase sigma factor RpoD	Regulator
ACG3JE_RS03620 (ACG3JE_03620)	-	684042..684380 (+)	339	WP_013793810.1	metal-sulfur cluster assembly factor	-
ACG3JE_RS03625 (ACG3JE_03625)	rfbD	684472..685323 (+)	852	WP_003103693.1	dTDP-4-dehydrorhamnose reductase	-
ACG3JE_RS03630 (ACG3JE_03630)	cps2T	685439..686592 (+)	1154	Protein_692	beta 1-4 rhamnosyltransferase Cps2T	-
ACG3JE_RS03635 (ACG3JE_03635)	-	686582..687514 (+)	933	WP_003105744.1	glycosyltransferase family 2 protein	-
ACG3JE_RS03640 (ACG3JE_03640)	-	687518..688321 (+)	804	WP_003103004.1	ABC transporter permease	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42201.87 Da
• Isoelectric Point: 4.4893

>NTDB_id=948830 ACG3JE_RS03615 WP_003105447.1 682779..683888(+) (rpoS) [Streptococcus parauberis strain DB-M17]
MAKENDITTFNVQVADFIRNHKKEGSAVDDEITEKLVIPFVLDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEQLIGSNSAKVNDPVRMYLKEIGVVPLLTGEEEKELAVAVDEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=948830 ACG3JE_RS03615 WP_003105447.1 682779..683888(+) (rpoS) [Streptococcus parauberis strain DB-M17]
ATGGCCAAAGAAAACGATATTACAACTTTTAACGTTCAAGTTGCAGATTTTATTCGTAATCATAAAAAAGAAGGATCTGC
AGTTGATGATGAAATTACAGAAAAATTAGTTATCCCATTCGTTTTAGATGCTGACCAAATTGATGATTTATTAGAACGCC
TGACTGATGGCGGTATTTCTATCACAGATAAAGAAGGAAATCCTTCATCTAAATATGTTGTTGAAGAACCAAAACCTGAA
GAACTTACAGATGAGCAATTAATCGGAAGTAATTCAGCTAAGGTAAATGATCCAGTTCGTATGTACTTGAAAGAAATTGG
GGTTGTTCCACTATTAACTGGTGAAGAAGAAAAAGAATTAGCAGTAGCTGTTGATGAAGGCGATTTAGAAGCTAAACAAC
GTCTGGCTGAAGCTAATTTACGTCTTGTAGTATCTATTGCTAAACGCTATGTTGGTCGTGGCATGCAATTTTTGGATTTA
ATTCAAGAAGGTAATATGGGTCTTATGAAAGCAGTTGATAAGTTTGACTATTCTAAAGGTTTTAAATTTTCAACTTATGC
AACATGGTGGATTCGCCAAGCAATTACACGTGCCATCGCCGACCAAGCACGTACTATTCGTATTCCAGTACATATGGTCG
AAACGATTAATAAATTAGTTAGAGAACAACGTAATTTGTTACAAGAATTAGGACAAGACCCAACGCCAGAACAAATTGCT
GAGCGCATGGAAATGACACCTGATAAAGTACGTGAAATTCTAAAAATTGCTCAAGAACCTGTTTCACTTGAAACTCCTAT
TGGTGAAGAAGATGATAGCCATCTTGGTGATTTTATTGAAGATGAAGTGATTGAAAATCCAGTAGATTATACAACACGTG
TTGTTTTACGTGAACAATTAGATGAAGTTTTAGATACATTAACTGACCGTGAAGAAAATGTATTGAGACTACGTTTTGGT
CTTGATGATGGGAAAATGCGTACTTTAGAAGATGTTGGTAAAGTTTTCAACGTTACAAGAGAGCGTATCCGTCAAATTGA
AGCCAAAGCACTCCGCAAACTCCGCCACCCAAGCAGAAGCAAACAATTAAGAGACTTTATTGAGGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-84)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363