Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8569_RS05175 Genome accession   NZ_AP028413
Coordinates   1016334..1016885 (+) Length   183 a.a.
NCBI ID   WP_002877747.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12448     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1011334..1021885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8569_RS05140 (I12448_10000) - 1011524..1011949 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  R8569_RS05145 (I12448_10010) - 1012014..1012634 (+) 621 WP_014517039.1 NAD(P)H-dependent oxidoreductase -
  R8569_RS05150 (I12448_10020) - 1012634..1013239 (+) 606 WP_317648089.1 NAD(P)H-dependent oxidoreductase -
  R8569_RS05155 (I12448_10030) pgsA 1013364..1013900 (+) 537 WP_002877743.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8569_RS05160 (I12448_10040) rseP 1013897..1015003 (+) 1107 WP_002877745.1 RIP metalloprotease RseP -
  R8569_RS05165 - 1014996..1015861 (+) 866 Protein_999 VirK family antimicrobial peptide resistance protein -
  R8569_RS05170 (I12448_10070) rpsF 1015948..1016325 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8569_RS05175 (I12448_10080) ssb 1016334..1016885 (+) 552 WP_002877747.1 single-stranded DNA-binding protein Machinery gene
  R8569_RS05180 (I12448_10090) rpsR 1016896..1017156 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8569_RS05185 (I12448_10100) lon 1017217..1019592 (-) 2376 WP_002868636.1 endopeptidase La -
  R8569_RS05190 (I12448_10110) bamD 1019609..1020256 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  R8569_RS05195 (I12448_10120) fliW 1020417..1020806 (+) 390 WP_002877749.1 flagellar assembly protein FliW -
  R8569_RS05200 (I12448_10130) proC 1020806..1021537 (+) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  R8569_RS05205 (I12448_10140) ctsT 1021534..1021836 (+) 303 WP_002877750.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20770.66 Da        Isoelectric Point: 5.0431

>NTDB_id=94879 R8569_RS05175 WP_002877747.1 1016334..1016885(+) (ssb) [Campylobacter jejuni strain IDH-12448]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=94879 R8569_RS05175 WP_002877747.1 1016334..1016885(+) (ssb) [Campylobacter jejuni strain IDH-12448]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
GGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCCGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372

Multiple sequence alignment