Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   ACG3JM_RS04275 Genome accession   NZ_CP171735
Coordinates   842353..842835 (-) Length   160 a.a.
NCBI ID   WP_013794077.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M11     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 837353..847835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JM_RS04255 (ACG3JM_04255) budA 837400..838119 (-) 720 WP_003107129.1 acetolactate decarboxylase -
  ACG3JM_RS04260 (ACG3JM_04260) alsS 838132..839808 (-) 1677 WP_003107132.1 acetolactate synthase AlsS -
  ACG3JM_RS04265 (ACG3JM_04265) - 839929..841161 (-) 1233 WP_041828448.1 lipopolysaccharide assembly protein LapB -
  ACG3JM_RS04270 (ACG3JM_04270) - 841151..842332 (-) 1182 WP_045407023.1 AI-2E family transporter -
  ACG3JM_RS04275 (ACG3JM_04275) mutX 842353..842835 (-) 483 WP_013794077.1 8-oxo-dGTP diphosphatase Machinery gene
  ACG3JM_RS04280 (ACG3JM_04280) - 843087..844097 (+) 1011 WP_013794078.1 lactonase family protein -
  ACG3JM_RS04285 (ACG3JM_04285) - 844160..844351 (+) 192 WP_003103548.1 hypothetical protein -
  ACG3JM_RS04290 (ACG3JM_04290) rfbB 844382..845428 (-) 1047 WP_003107140.1 dTDP-glucose 4,6-dehydratase -
  ACG3JM_RS04295 (ACG3JM_04295) - 845450..846043 (-) 594 WP_013794079.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  ACG3JM_RS04300 (ACG3JM_04300) rfbA 846043..846912 (-) 870 WP_003104922.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18853.16 Da        Isoelectric Point: 4.2700

>NTDB_id=948733 ACG3JM_RS04275 WP_013794077.1 842353..842835(-) (mutX) [Streptococcus parauberis strain DB-M11]
MMQLATICYIDNGDSLLLLHRNKKENDIHEGKWISVGGKLESGESPDECAIREIFEETHLTVKEMDFKGVITFPEFTPGL
DWYTYVFKVTDFDGQLISDEESREGTLEWVPYDEVLKKPTWEGDYEIFKWILEDRPFFSAKFTYDKSNQLIDQSVHFYEK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=948733 ACG3JM_RS04275 WP_013794077.1 842353..842835(-) (mutX) [Streptococcus parauberis strain DB-M11]
ATGATGCAATTAGCAACAATTTGTTATATTGATAATGGAGACTCATTATTACTATTACACCGAAATAAAAAAGAGAATGA
TATTCATGAAGGGAAATGGATTTCTGTGGGTGGTAAACTTGAATCTGGCGAGAGTCCTGATGAATGTGCTATTCGTGAGA
TATTTGAAGAAACACATCTAACTGTTAAAGAGATGGACTTTAAGGGTGTGATTACTTTTCCTGAATTTACACCTGGTCTT
GATTGGTATACTTACGTTTTTAAAGTGACGGACTTTGATGGACAATTGATTTCAGACGAAGAATCTCGAGAAGGAACTTT
AGAATGGGTTCCTTATGATGAAGTCTTAAAGAAACCAACTTGGGAAGGTGATTATGAAATCTTCAAGTGGATTTTAGAAG
ATCGTCCATTCTTTTCAGCTAAATTTACTTATGATAAATCAAATCAATTAATTGATCAATCTGTACACTTCTATGAAAAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

70.44

99.375

0.7