Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8569_RS03050 Genome accession   NZ_AP028413
Coordinates   593056..593439 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12448     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 588056..598439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8569_RS03030 (I12448_05900) - 588135..590069 (-) 1935 WP_317648571.1 RNB domain-containing ribonuclease -
  R8569_RS03035 (I12448_05910) ilvC 590188..591210 (+) 1023 WP_032589477.1 ketol-acid reductoisomerase -
  R8569_RS03040 (I12448_05920) - 591214..592296 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  R8569_RS03045 (I12448_05930) dprA 592286..593059 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  R8569_RS03050 (I12448_05940) dprB 593056..593439 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  R8569_RS03055 (I12448_05950) - 593468..594307 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8569_RS03060 (I12448_05960) msrA 594483..594980 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8569_RS03065 (I12448_05970) ppa 595021..595539 (-) 519 WP_002855031.1 inorganic diphosphatase -
  R8569_RS03070 (I12448_05980) adk 595549..596127 (-) 579 WP_002855137.1 adenylate kinase -
  R8569_RS03075 (I12448_05990) aspS 596124..597875 (-) 1752 WP_317648573.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=94872 R8569_RS03050 WP_002856861.1 593056..593439(+) (dprB) [Campylobacter jejuni strain IDH-12448]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=94872 R8569_RS03050 WP_002856861.1 593056..593439(+) (dprB) [Campylobacter jejuni strain IDH-12448]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment