Detailed information NTG0948719

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACG3JM_RS02145
• Genome accession: NZ_CP171735
• Coordinates: 414211..415320 (+)
• Length: 369 a.a.
• NCBI ID: WP_003105447.1
• Uniprot ID: A0ABN0ITI9
• Organism: Streptococcus parauberis strain DB-M11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 409211..420320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JM_RS02120 (ACG3JM_02120)	-	409515..410645 (+)	1131	WP_013793808.1	aminotransferase	-
ACG3JM_RS02125 (ACG3JM_02125)	-	410660..411472 (+)	813	WP_003104103.1	transporter substrate-binding domain-containing protein	-
ACG3JM_RS02130 (ACG3JM_02130)	rpsU	411600..411776 (+)	177	WP_000048058.1	30S ribosomal protein S21	-
ACG3JM_RS02135 (ACG3JM_02135)	mscL	411884..412264 (-)	381	WP_003104850.1	large conductance mechanosensitive channel protein MscL	-
ACG3JM_RS02140 (ACG3JM_02140)	dnaG	412391..414202 (+)	1812	WP_003106531.1	DNA primase	-
ACG3JM_RS02145 (ACG3JM_02145)	rpoS	414211..415320 (+)	1110	WP_003105447.1	RNA polymerase sigma factor RpoD	Regulator
ACG3JM_RS02150 (ACG3JM_02150)	-	415474..415812 (+)	339	WP_013793810.1	metal-sulfur cluster assembly factor	-
ACG3JM_RS02155 (ACG3JM_02155)	rfbD	415904..416755 (+)	852	WP_003103693.1	dTDP-4-dehydrorhamnose reductase	-
ACG3JM_RS02160 (ACG3JM_02160)	cps2T	416871..418025 (+)	1155	WP_013793811.1	beta 1-4 rhamnosyltransferase Cps2T	-
ACG3JM_RS02165 (ACG3JM_02165)	-	418015..418947 (+)	933	WP_003105744.1	glycosyltransferase family 2 protein	-
ACG3JM_RS02170 (ACG3JM_02170)	-	418951..419754 (+)	804	WP_003103004.1	ABC transporter permease	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42201.87 Da
• Isoelectric Point: 4.4893

>NTDB_id=948719 ACG3JM_RS02145 WP_003105447.1 414211..415320(+) (rpoS) [Streptococcus parauberis strain DB-M11]
MAKENDITTFNVQVADFIRNHKKEGSAVDDEITEKLVIPFVLDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEQLIGSNSAKVNDPVRMYLKEIGVVPLLTGEEEKELAVAVDEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=948719 ACG3JM_RS02145 WP_003105447.1 414211..415320(+) (rpoS) [Streptococcus parauberis strain DB-M11]
ATGGCCAAAGAAAACGATATTACAACTTTTAACGTTCAAGTTGCAGATTTTATTCGTAATCATAAAAAAGAAGGATCTGC
AGTTGATGATGAAATTACAGAAAAATTAGTTATCCCATTCGTTTTAGATGCTGACCAAATTGATGATTTATTAGAACGCC
TGACTGATGGCGGTATTTCTATCACAGATAAAGAAGGAAATCCTTCATCTAAATATGTTGTTGAAGAACCAAAACCTGAA
GAACTTACAGATGAGCAATTAATCGGAAGTAATTCAGCTAAGGTAAATGATCCAGTTCGTATGTACTTGAAAGAAATTGG
GGTTGTTCCACTATTAACTGGTGAAGAAGAAAAAGAATTAGCAGTAGCTGTTGATGAAGGCGATTTAGAAGCTAAACAAC
GTCTGGCTGAAGCTAATTTACGTCTTGTAGTATCTATTGCTAAACGCTATGTTGGTCGTGGCATGCAATTTTTGGATTTA
ATTCAAGAAGGTAATATGGGTCTTATGAAAGCAGTTGATAAGTTTGACTATTCTAAAGGTTTTAAATTTTCAACTTATGC
AACATGGTGGATTCGCCAAGCAATTACACGTGCCATCGCCGACCAAGCACGTACTATTCGTATTCCAGTACATATGGTCG
AAACGATTAATAAATTAGTTAGAGAACAACGTAATTTGTTACAAGAATTAGGACAAGACCCAACGCCAGAACAAATTGCT
GAGCGCATGGAAATGACACCTGATAAAGTACGTGAAATTCTAAAAATTGCTCAAGAACCTGTTTCACTTGAAACTCCTAT
TGGTGAAGAAGATGATAGCCATCTTGGTGATTTTATTGAAGATGAAGTGATTGAAAATCCAGTAGATTATACAACACGTG
TTGTTTTACGTGAACAATTAGATGAAGTTTTAGATACATTAACTGACCGTGAAGAAAATGTATTGAGACTACGTTTTGGT
CTTGATGATGGGAAAATGCGTACTTTAGAAGATGTTGGTAAAGTTTTCAACGTTACAAGAGAGCGTATCCGTCAAATTGA
AGCCAAAGCACTCCGCAAACTCCGCCACCCAAGCAGAAGCAAACAATTAAGAGACTTTATTGAGGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-84)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363