Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   ACG3JM_RS02115 Genome accession   NZ_CP171735
Coordinates   405766..409404 (+) Length   1212 a.a.
NCBI ID   WP_013793807.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 400766..414404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JM_RS02105 (ACG3JM_02105) - 401381..402325 (-) 945 WP_003106525.1 neutral zinc metallopeptidase -
  ACG3JM_RS02110 (ACG3JM_02110) rexB 402513..405776 (+) 3264 WP_045407189.1 ATP-dependent nuclease subunit B Machinery gene
  ACG3JM_RS02115 (ACG3JM_02115) rexA 405766..409404 (+) 3639 WP_013793807.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACG3JM_RS02120 (ACG3JM_02120) - 409515..410645 (+) 1131 WP_013793808.1 aminotransferase -
  ACG3JM_RS02125 (ACG3JM_02125) - 410660..411472 (+) 813 WP_003104103.1 transporter substrate-binding domain-containing protein -
  ACG3JM_RS02130 (ACG3JM_02130) rpsU 411600..411776 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  ACG3JM_RS02135 (ACG3JM_02135) mscL 411884..412264 (-) 381 WP_003104850.1 large conductance mechanosensitive channel protein MscL -
  ACG3JM_RS02140 (ACG3JM_02140) dnaG 412391..414202 (+) 1812 WP_003106531.1 DNA primase -

Sequence

Protein


Download         Length: 1212 a.a.        Molecular weight: 139594.36 Da        Isoelectric Point: 5.6934

>NTDB_id=948718 ACG3JM_RS02115 WP_013793807.1 405766..409404(+) (rexA) [Streptococcus parauberis strain DB-M11]
MNFKPFLTADQIKALQLHEASSNKKQKRTPEQIEAIYTSGQNVLVSASAGSGKTFVMVERIIDKLLRGVAIEEMFISTFT
VKAATELKERLEKKLVEAIKASDDYEMKSFLNYQLQSIHIADIGTMDSFTQKLISEYGYTLGIAPKYRIMQDKSEQDVIK
DIIYKDLFEIYMASDETGDFLRLVKNFSGNRKDSNGFKEIVNKVYTFSQSTENPLLWLDEVFLKGAQDYQGYADLPDYII
TDFLKIMSETAKQLRDLTEMEGYPKEKKDGKPTAKYTGHLKIIDYLEQNANEFNYIEDKDKISHLANEVSNLLPAGDSIT
VNKIAYQVYKQINASLRNLRHLDTIIQYQAESIPLLILLKNFVVDFSNAYLDRKKIENAFEFSDIAHFAIALLETYPEIR
QLYQDKYHEVMVDEYQDNNHMQERLLDLLSSGHNRFMVGDIKQSIYRFRQADPQIFNSKFKAYQEDPNQGKLILLKENFR
SQSEVLDVTNAIFTHLMDEEIGDILYDDNHRLIPGSAKQRELKTSNQAQVWIYDTDETSNPEPDSESDNDNLSPGQVKIV
AKEIIRLHQEEAVPFSEITLLVSSRTRNDSIFQTFNQYGIPLVADGGQENYLKSVEVMVMLETLRSINNPYNDYALVALM
RSPMFNFDEDQLARIALQTSQTQKLDSYYEKLKLAKSGQGQQRQLITTELAEKIGKFLSYLSQWRTYSQKQSLYSLIWKI
YNDRFYFDFVGTLPKAEQAQANLYALALRAQQFEKTGFKGLTRFIGMIDKILNSQNDLADVDVAKPKDAVSIMTIHKSKG
LEFQYVFILNCDKKFALKDIHSPMILSRHRGAGIKFLADLKDKLQANQLASLKVYLETIPYQMNRQELIFATLSEQMRLF
YVAMTRAEKKLYLIGKGSQKKLVDKFDGQKEGNHLPKALRESMQSFQEWILAIQAAFPLKDLHFNLAYIDDSQLTDQEIG
HLENKHSLDPDNLQNNRQTDEIARAIDMLDKVQELNQTYHAAITLPTVRTPSQIKKFYEPIMPSEGIDIISKTPFLPAEI
VLPDFSKEKTVLASDIGSAMHELMQRIPISDSLSLDDVEEAKRLIDASEEVKAALNLNMVFDFFEHTALGQMLQRNKERL
YREAPFAMLKMDNASHEKFVVRGIIDGFLRFDDRIILFDYKTDKYKNPLDIGHRYQDQMELYAEALQQAYGIHKIEKHLV
LLGGKKVEIITL

Nucleotide


Download         Length: 3639 bp        

>NTDB_id=948718 ACG3JM_RS02115 WP_013793807.1 405766..409404(+) (rexA) [Streptococcus parauberis strain DB-M11]
ATGAACTTTAAGCCATTTTTAACTGCTGATCAAATCAAAGCTTTGCAATTACATGAAGCAAGTTCTAATAAAAAGCAAAA
ACGGACACCTGAGCAAATTGAAGCCATTTATACAAGTGGACAAAATGTTCTTGTATCAGCTTCAGCTGGTTCAGGTAAAA
CCTTTGTTATGGTTGAACGAATCATAGATAAGCTTCTCCGTGGAGTTGCAATCGAGGAAATGTTTATCTCTACATTTACT
GTTAAAGCAGCTACGGAATTAAAAGAACGTCTTGAAAAGAAATTAGTTGAGGCAATTAAAGCTAGTGATGATTATGAGAT
GAAATCTTTTCTCAATTACCAACTCCAGTCTATACACATAGCTGACATAGGAACAATGGATTCCTTCACCCAAAAGTTGA
TTTCAGAATATGGTTATACCTTAGGAATTGCGCCCAAATATCGCATTATGCAAGACAAGTCTGAGCAAGATGTTATAAAA
GATATTATTTATAAGGACCTATTTGAAATTTACATGGCATCAGATGAGACTGGTGACTTCCTCAGACTAGTCAAAAACTT
TTCTGGAAATCGCAAGGATTCAAATGGTTTTAAGGAAATTGTCAATAAGGTCTACACCTTCAGTCAATCAACGGAAAATC
CCTTATTATGGCTAGATGAGGTTTTCTTAAAAGGAGCACAAGACTACCAAGGCTATGCTGATTTACCGGATTATATTATC
ACTGATTTCCTCAAAATCATGTCTGAAACAGCAAAGCAATTACGTGATTTAACTGAGATGGAAGGTTATCCAAAAGAGAA
AAAAGATGGTAAACCAACGGCTAAGTATACAGGACACTTAAAAATAATTGATTACTTAGAGCAGAACGCTAATGAGTTTA
ATTATATTGAAGATAAAGATAAGATAAGTCATTTAGCTAACGAAGTTTCAAACTTATTACCAGCAGGAGATTCTATTACA
GTTAACAAAATCGCCTATCAAGTCTATAAGCAAATTAATGCTAGCTTAAGAAACTTACGTCATCTTGATACCATTATTCA
GTATCAAGCAGAAAGTATCCCACTTTTAATCCTTCTGAAAAATTTTGTTGTTGATTTTTCAAATGCTTATCTGGATCGCA
AAAAAATTGAGAATGCTTTTGAATTTTCAGACATTGCTCATTTTGCAATTGCTCTTCTAGAAACATACCCAGAGATTAGA
CAGCTGTATCAAGATAAGTACCATGAAGTAATGGTTGATGAGTATCAGGATAACAATCACATGCAAGAACGACTACTTGA
CTTATTATCAAGTGGGCATAATCGTTTTATGGTAGGTGATATAAAACAATCGATTTATCGCTTCCGTCAAGCTGACCCAC
AAATCTTTAATAGTAAATTTAAAGCGTATCAGGAAGATCCAAATCAAGGGAAATTAATCCTACTAAAAGAAAATTTCCGG
AGTCAATCGGAAGTTCTTGATGTAACAAATGCTATATTTACTCATTTGATGGATGAAGAAATTGGTGATATCCTTTATGA
TGACAATCATCGTCTCATCCCAGGAAGTGCAAAACAAAGAGAACTGAAAACAAGTAATCAAGCTCAAGTCTGGATTTATG
ACACAGATGAGACAAGTAATCCTGAACCTGATTCAGAAAGTGACAATGACAACCTTAGCCCAGGTCAAGTCAAGATTGTA
GCAAAAGAAATAATCCGTCTTCATCAAGAAGAAGCTGTACCCTTTTCAGAAATTACCTTATTGGTCTCATCCAGAACGCG
TAATGACAGTATTTTTCAAACCTTTAATCAGTACGGCATACCACTAGTGGCAGATGGCGGTCAAGAAAACTATCTGAAGT
CAGTAGAAGTCATGGTTATGCTAGAAACCCTTCGATCCATCAACAATCCTTATAATGACTATGCTTTGGTTGCCTTAATG
CGATCGCCAATGTTTAACTTTGACGAAGATCAATTGGCAAGAATTGCTTTGCAGACAAGCCAAACTCAAAAGTTAGATAG
TTATTATGAAAAATTAAAACTAGCAAAAAGTGGACAGGGTCAGCAGCGACAATTAATTACTACTGAATTAGCCGAAAAAA
TTGGCAAATTTCTAAGTTATCTTAGTCAATGGCGAACCTATTCTCAGAAGCAATCATTGTATTCCCTAATTTGGAAAATT
TATAATGATCGATTCTATTTTGATTTTGTTGGAACATTACCGAAAGCTGAACAGGCTCAGGCCAACTTGTACGCACTTGC
CTTACGGGCACAGCAATTCGAGAAGACAGGGTTTAAAGGTTTAACACGGTTTATCGGAATGATTGATAAAATTCTAAATA
GTCAAAATGACTTGGCTGATGTTGATGTTGCGAAACCAAAAGATGCGGTTAGTATCATGACTATTCATAAATCGAAAGGC
TTAGAGTTTCAGTATGTCTTTATCTTAAACTGTGATAAAAAATTTGCCTTGAAAGATATCCACTCACCGATGATTTTAAG
CCGCCACCGTGGGGCTGGAATTAAATTTTTAGCTGATTTAAAAGACAAATTACAAGCTAATCAACTGGCTAGTCTAAAAG
TTTATCTGGAAACAATTCCTTACCAAATGAATCGTCAGGAGTTAATCTTTGCTACCCTATCAGAACAAATGCGACTCTTC
TATGTGGCGATGACCAGAGCAGAGAAAAAATTGTATTTGATTGGTAAAGGAAGTCAAAAGAAATTAGTAGATAAATTTGA
TGGTCAAAAAGAAGGAAACCACTTACCGAAAGCTTTAAGAGAAAGTATGCAAAGCTTTCAAGAATGGATTCTCGCTATCC
AGGCTGCCTTTCCACTAAAAGACTTGCATTTTAATCTAGCATATATTGATGATAGTCAACTTACTGATCAAGAAATTGGC
CATTTAGAAAACAAACATAGTTTAGATCCTGATAATCTCCAAAATAACCGGCAGACTGATGAGATTGCGCGTGCCATTGA
TATGTTGGATAAAGTCCAAGAGCTAAATCAAACATACCACGCGGCGATTACTTTACCAACAGTTCGTACCCCAAGTCAAA
TTAAGAAGTTTTATGAACCAATTATGCCTTCTGAAGGGATTGACATTATCAGTAAAACACCATTTTTACCGGCTGAAATT
GTCTTGCCTGATTTTTCAAAAGAAAAAACAGTATTGGCTAGTGATATTGGTTCAGCAATGCATGAACTAATGCAGCGAAT
TCCCATCTCTGATTCTCTTAGCTTAGATGATGTTGAAGAAGCTAAAAGGTTAATTGATGCAAGTGAGGAAGTTAAAGCAG
CATTAAACCTCAATATGGTGTTTGATTTCTTTGAACATACTGCATTAGGTCAAATGCTTCAAAGAAATAAAGAACGTTTA
TATCGTGAAGCACCATTTGCCATGCTCAAAATGGATAATGCCAGCCACGAAAAATTTGTTGTTCGTGGGATCATTGATGG
TTTCTTACGTTTTGATGATAGAATTATCCTTTTTGATTATAAAACTGACAAGTACAAGAATCCTCTTGACATTGGCCATC
GTTACCAAGACCAAATGGAACTATATGCAGAAGCTCTCCAACAAGCCTATGGCATTCATAAGATTGAAAAACATTTAGTC
CTACTTGGTGGAAAAAAAGTTGAAATAATAACCTTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(473-894)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-463)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1050-1189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

48.295

100

0.491