Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | WEB83_RS13525 | Genome accession | NZ_CP147785 |
| Coordinates | 2538703..2539482 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus anthracis strain Sterne-CLR2-11 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2499881..2573804 | 2538703..2539482 | within | 0 |
Gene organization within MGE regions
Location: 2499881..2573804
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WEB83_RS13335 (WEB83_13345) | rsmB | 2500039..2501373 (+) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| WEB83_RS13340 (WEB83_13350) | rlmN | 2501378..2502466 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| WEB83_RS13345 (WEB83_13355) | - | 2502471..2503223 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| WEB83_RS13350 (WEB83_13360) | prkC | 2503232..2505205 (+) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| WEB83_RS13355 (WEB83_13365) | rsgA | 2505474..2506355 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| WEB83_RS13360 (WEB83_13370) | rpe | 2506358..2507002 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| WEB83_RS13365 (WEB83_13375) | - | 2507102..2507782 (+) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| WEB83_RS13370 (WEB83_13380) | spoVM | 2507849..2507929 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| WEB83_RS13375 (WEB83_13385) | rpmB | 2508002..2508190 (-) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| WEB83_RS13380 (WEB83_13390) | - | 2508569..2508931 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| WEB83_RS13385 (WEB83_13395) | - | 2508954..2510630 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| WEB83_RS13390 (WEB83_13400) | recG | 2510920..2512968 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| WEB83_RS13395 (WEB83_13405) | fapR | 2513057..2513650 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| WEB83_RS13400 (WEB83_13410) | plsX | 2513647..2514639 (+) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| WEB83_RS13405 (WEB83_13415) | fabD | 2514654..2515598 (+) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| WEB83_RS13410 (WEB83_13420) | fabG | 2515598..2516338 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| WEB83_RS13415 (WEB83_13425) | acpP | 2516408..2516641 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| WEB83_RS13420 (WEB83_13430) | rncS | 2516700..2517437 (+) | 738 | WP_001146873.1 | ribonuclease III | - |
| WEB83_RS13425 (WEB83_13435) | smc | 2517584..2521153 (+) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| WEB83_RS13430 (WEB83_13440) | ftsY | 2521169..2522158 (+) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| WEB83_RS13435 (WEB83_13445) | - | 2522291..2522623 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| WEB83_RS13440 (WEB83_13450) | ffh | 2522636..2523985 (+) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| WEB83_RS13445 (WEB83_13455) | rpsP | 2524086..2524358 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| WEB83_RS13450 (WEB83_13460) | - | 2524373..2524600 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| WEB83_RS13455 (WEB83_13465) | rimM | 2524721..2525236 (+) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| WEB83_RS13460 (WEB83_13470) | trmD | 2525236..2525970 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| WEB83_RS13465 (WEB83_13475) | rplS | 2526117..2526461 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| WEB83_RS13470 (WEB83_13480) | lepB | 2526563..2527114 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| WEB83_RS13475 (WEB83_13485) | ylqF | 2527135..2528025 (+) | 891 | WP_000236707.1 | ribosome biogenesis GTPase YlqF | - |
| WEB83_RS13480 (WEB83_13490) | rnhB | 2528077..2528850 (+) | 774 | WP_001174712.1 | ribonuclease HII | - |
| WEB83_RS13485 (WEB83_13495) | sucC | 2529044..2530204 (+) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| WEB83_RS13490 (WEB83_13500) | sucD | 2530225..2531127 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| WEB83_RS13495 (WEB83_13505) | dprA | 2531449..2532083 (+) | 635 | Protein_2569 | DNA-processing protein DprA | - |
| WEB83_RS13500 (WEB83_13510) | topA | 2532228..2534306 (+) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| WEB83_RS13505 (WEB83_13515) | trmFO | 2534357..2535661 (+) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| WEB83_RS13510 (WEB83_13520) | xerC | 2535727..2536626 (+) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| WEB83_RS13515 (WEB83_13525) | hslV | 2536669..2537211 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| WEB83_RS13520 (WEB83_13530) | hslU | 2537234..2538625 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| WEB83_RS13525 (WEB83_13535) | codY | 2538703..2539482 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| WEB83_RS13530 (WEB83_13540) | rpsB | 2539832..2540533 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| WEB83_RS13535 (WEB83_13545) | tsf | 2540637..2541524 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| WEB83_RS13540 (WEB83_13550) | pyrH | 2541591..2542313 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| WEB83_RS13545 (WEB83_13555) | frr | 2542316..2542873 (+) | 558 | WP_000531498.1 | ribosome recycling factor | - |
| WEB83_RS13550 (WEB83_13560) | uppS | 2542959..2543735 (+) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| WEB83_RS13555 (WEB83_13565) | cdsA | 2543753..2544544 (+) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| WEB83_RS13560 (WEB83_13570) | dxr | 2544568..2545710 (+) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| WEB83_RS13565 (WEB83_13575) | rseP | 2545727..2546983 (+) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| WEB83_RS13570 (WEB83_13580) | - | 2547093..2548793 (+) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| WEB83_RS13575 (WEB83_13585) | - | 2548918..2553219 (+) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| WEB83_RS13580 (WEB83_13590) | rimP | 2553552..2554022 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| WEB83_RS13585 (WEB83_13595) | nusA | 2554040..2555146 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| WEB83_RS13590 (WEB83_13600) | rnpM | 2555158..2555430 (+) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| WEB83_RS13595 (WEB83_13605) | - | 2555431..2555742 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| WEB83_RS13600 (WEB83_13610) | infB | 2555747..2557807 (+) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| WEB83_RS13605 (WEB83_13615) | - | 2557804..2558085 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| WEB83_RS13610 (WEB83_13620) | rbfA | 2558101..2558457 (+) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| WEB83_RS13615 (WEB83_13625) | truB | 2558544..2559467 (+) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| WEB83_RS13620 (WEB83_13630) | ribF | 2559511..2560482 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WEB83_RS13625 (WEB83_13635) | rpsO | 2560583..2560852 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| WEB83_RS13630 (WEB83_13640) | pnp | 2561013..2563151 (+) | 2139 | WP_000076733.1 | polyribonucleotide nucleotidyltransferase | - |
| WEB83_RS13635 (WEB83_13645) | - | 2563303..2564202 (+) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| WEB83_RS13640 (WEB83_13650) | - | 2564289..2565530 (+) | 1242 | WP_000592993.1 | pitrilysin family protein | - |
| WEB83_RS13645 (WEB83_13655) | - | 2565657..2565908 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| WEB83_RS13650 (WEB83_13660) | dpaA | 2566183..2567085 (+) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| WEB83_RS13655 (WEB83_13665) | dpaB | 2567082..2567681 (+) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| WEB83_RS13660 (WEB83_13670) | asd | 2567832..2568878 (+) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| WEB83_RS13665 (WEB83_13675) | dapG | 2568902..2570134 (+) | 1233 | WP_000692470.1 | aspartate kinase | - |
| WEB83_RS13670 (WEB83_13680) | dapA | 2570146..2571024 (+) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| WEB83_RS13675 (WEB83_13685) | - | 2571790..2573460 (+) | 1671 | WP_000823085.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=948672 WEB83_RS13525 WP_000421288.1 2538703..2539482(+) (codY) [Bacillus anthracis strain Sterne-CLR2-11]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=948672 WEB83_RS13525 WP_000421288.1 2538703..2539482(+) (codY) [Bacillus anthracis strain Sterne-CLR2-11]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |