Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   R8609_RS08505 Genome accession   NZ_AP028412
Coordinates   1665869..1667767 (+) Length   632 a.a.
NCBI ID   WP_002867545.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1660869..1672767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8609_RS08475 (I12128_16970) - 1661534..1661806 (+) 273 WP_002858971.1 NifU family protein -
  R8609_RS08480 (I12128_16980) - 1661793..1662344 (+) 552 WP_002851410.1 hypothetical protein -
  R8609_RS08485 (I12128_16990) murE 1662328..1663611 (+) 1284 WP_002867548.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  R8609_RS08490 (I12128_17000) - 1663615..1663926 (+) 312 WP_002851172.1 YbaB/EbfC family nucleoid-associated protein -
  R8609_RS08495 (I12128_17010) - 1663923..1665017 (+) 1095 WP_002867547.1 PDZ domain-containing protein -
  R8609_RS08500 (I12128_17020) ispA 1665014..1665859 (+) 846 WP_002867546.1 polyprenyl synthetase family protein -
  R8609_RS08505 (I12128_17030) recP/tkt 1665869..1667767 (+) 1899 WP_002867545.1 transketolase Machinery gene
  R8609_RS08510 (I12128_17040) iamB 1667769..1668878 (+) 1110 WP_002867544.1 ABC transporter permease -
  R8609_RS08515 (I12128_17050) iamA 1668879..1669601 (+) 723 WP_002860093.1 ABC transporter ATP-binding protein -
  R8609_RS08520 (I12128_17060) - 1669604..1670494 (+) 891 WP_139850082.1 MlaD family protein -
  R8609_RS08525 (I12128_17070) - 1670494..1671093 (+) 600 WP_002867543.1 ABC-type transport auxiliary lipoprotein family protein -
  R8609_RS08530 (I12128_17080) - 1671149..1671649 (+) 501 WP_002858979.1 flagellar FLiS export co-chaperone -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69602.42 Da        Isoelectric Point: 6.3607

>NTDB_id=94858 R8609_RS08505 WP_002867545.1 1665869..1667767(+) (recP/tkt) [Campylobacter jejuni strain IDH-12128]
MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERL
LNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHGMGDFVEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFLLSRQKLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMP
CFELFEKQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSKLVNFILSK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=94858 R8609_RS08505 WP_002867545.1 1665869..1667767(+) (recP/tkt) [Campylobacter jejuni strain IDH-12128]
ATGGACATTCAAATTTTACAAGAACAGGCAAATACTCTAAGATTTTTAAGTGCCGATATGGTGCAAAAAGCAAACTCAGG
ACACCCAGGTGCACCTTTGGGTTTAGCAGATATTTTAAGTGTTTTAAGTTATCATTTAAAACACAATCCTAAAAATCCCA
CTTGGCTAAACCGCGATAGACTTGTATTTTCAGGCGGACATGCAAGTGCTTTGCTTTATAGTTTTTTACATTTAAGCGGC
TATGACTTAAGCTTAGAAGATCTTAAAAATTTCCGCCAACTTCATTCTAAAACCCCAGGACACCCTGAAATTTCAACTCT
TGGAGTAGAAATCGCTACAGGCCCTTTAGGACAAGGCGTTGCCAATGCTGTAGGCTTTGCTATGGCAGCAAAAAAAGCAC
AAAATTTGCTAGGCAGTGATTTAATCGATCATAAAATTTATTGTCTTTGCGGAGATGGGGATTTACAAGAAGGCATTTCT
TATGAAGCTTGTTCTTTAGCAGGACTTCACAAACTTGATAACTTCATACTTATTTATGATAGCAACAATATCTCCATAGA
AGGCGATGTAGGTTTAGCCTTTAACGAAAATGTAAAAATGCGTTTTGAAGCACAAGGATTTGAAGTTTTAAGTATAAATG
GACACGATTATGAAGAAATCAATAAAGCCTTAGAACAAGCTAAAAAATCCACAAAACCTTGTCTTATCATCGCAAAAACA
ACTATAGCAAAGGGTGCAGGAGAGCTTGAAGGCAGTCATAAAAGCCATGGCGCACCTTTGGGTGAAGAAGTGATTAAAAA
AGCCAAAGAACAAGCAGGTTTTGATCCAAATATCAGTTTTCATATCCCACAAGCAAGCAAAATCCGCTTTGAAAGTGCTG
TAGAACTTGGGGATTTAGAAGAAGCAAAATGGAAAGATAAGCTTGAAAAAAGTGCTAAAAAAGAACTTTTAGAAAGGCTA
TTAAATCCTGATTTTAACAAGATAGCTTATCCTGATTTTAAAGGAAAAGATCTTGCTACAAGAGATAGTAATGGTGAAAT
TTTAAATGTTTTAGCTAAAAATTTAGAAGGATTTTTAGGTGGAAGTGCAGACTTAGGCCCTTCAAACAAAACAGAACTTC
ACGGCATGGGAGACTTTGTAGAAGGTAAAAATATCCATTTTGGTATCAGAGAACACGCTATGGCAGCGATTAACAATGCT
TTTGCAAGATATGGAATTTTCTTACCATTTTCGGCAACTTTTTTCATCTTTAGCGAGTACTTAAAACCTGCCGCAAGAAT
AGCAGCTCTAATGAAAATCAAACATTTTTTCATTTTCACACACGATAGCATAGGCGTGGGCGAAGATGGACCAACACACC
AACCTATAGAACAACTTAGCACTTTTAGAGCTATGCCAAATTTTTTAACCTTTAGACCTGCTGATGGGGTGGAAAATGTC
AAAGCTTGGCAAATAGCCCTAAATGCTGATATTCCGAGTGCTTTTCTGCTTTCACGCCAAAAACTCAAAGCTCTAAATGA
ACCTGTTTTTGGAGATGTAAAAAATGGAGCGTATTTACTCAAAGAAAGCAAAGAGGCTAAATTTACACTTTTAGCAAGTG
GAAGTGAAGTTTGGCTTTGTTTAGAAAGTGCAAACGAACTTGAAAAACAAGGTTTTGCTTGTAATGTTGTTTCCATGCCT
TGTTTTGAACTTTTTGAAAAACAAGATAAAGCTTATCAAGAAAGATTGTTAAAAGGTGAAGTTATAGGTGTTGAAGCAGC
GCATTCTAATGAACTTTATAAATTTTGCCATAAAGTGTATGGCATAGAAAGTTTTGGAGAAAGTGGCAAAGACAAAGATG
TGTTTGAACACTTTGGATTTAGCGTTTCAAAGCTTGTAAATTTTATCCTTAGCAAATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)

Transketolase, C-terminal domain (Transketolase_C)

(521-623)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.586

100

0.416

Multiple sequence alignment