Detailed information NTG0948569

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACG3JJ_RS08150
• Genome accession: NZ_CP171733
• Coordinates: 1601816..1602925 (-)
• Length: 369 a.a.
• NCBI ID: WP_003105447.1
• Uniprot ID: A0ABN0ITI9
• Organism: Streptococcus parauberis strain DB-M5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1596816..1607925

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JJ_RS08125 (ACG3JJ_08125)	-	1597382..1598185 (-)	804	WP_003103004.1	ABC transporter permease	-
ACG3JJ_RS08130 (ACG3JJ_08130)	-	1598189..1599121 (-)	933	WP_003105744.1	glycosyltransferase family 2 protein	-
ACG3JJ_RS08135 (ACG3JJ_08135)	cps2T	1599111..1600265 (-)	1155	WP_013793811.1	beta 1-4 rhamnosyltransferase Cps2T	-
ACG3JJ_RS08140 (ACG3JJ_08140)	rfbD	1600381..1601232 (-)	852	WP_003103693.1	dTDP-4-dehydrorhamnose reductase	-
ACG3JJ_RS08145 (ACG3JJ_08145)	-	1601324..1601662 (-)	339	WP_013793810.1	metal-sulfur cluster assembly factor	-
ACG3JJ_RS08150 (ACG3JJ_08150)	rpoS	1601816..1602925 (-)	1110	WP_003105447.1	RNA polymerase sigma factor RpoD	Regulator
ACG3JJ_RS08155 (ACG3JJ_08155)	dnaG	1602934..1604745 (-)	1812	WP_003106531.1	DNA primase	-
ACG3JJ_RS08160 (ACG3JJ_08160)	mscL	1604872..1605252 (+)	381	WP_003104850.1	large conductance mechanosensitive channel protein MscL	-
ACG3JJ_RS08165 (ACG3JJ_08165)	rpsU	1605361..1605537 (-)	177	WP_000048058.1	30S ribosomal protein S21	-
ACG3JJ_RS08170 (ACG3JJ_08170)	-	1605665..1606477 (-)	813	WP_003104103.1	transporter substrate-binding domain-containing protein	-
ACG3JJ_RS08175 (ACG3JJ_08175)	-	1606492..1607622 (-)	1131	WP_013793808.1	aminotransferase	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42201.87 Da
• Isoelectric Point: 4.4893

>NTDB_id=948569 ACG3JJ_RS08150 WP_003105447.1 1601816..1602925(-) (rpoS) [Streptococcus parauberis strain DB-M5]
MAKENDITTFNVQVADFIRNHKKEGSAVDDEITEKLVIPFVLDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEQLIGSNSAKVNDPVRMYLKEIGVVPLLTGEEEKELAVAVDEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=948569 ACG3JJ_RS08150 WP_003105447.1 1601816..1602925(-) (rpoS) [Streptococcus parauberis strain DB-M5]
ATGGCCAAAGAAAACGATATTACAACTTTTAACGTTCAAGTTGCAGATTTTATTCGTAATCATAAAAAAGAAGGATCTGC
AGTTGATGATGAAATTACAGAAAAATTAGTTATCCCATTCGTTTTAGATGCTGACCAAATTGATGATTTATTAGAACGCC
TGACTGATGGCGGTATTTCTATCACAGATAAAGAAGGAAATCCTTCATCTAAATATGTTGTTGAAGAACCAAAACCTGAA
GAACTTACAGATGAGCAATTAATCGGAAGTAATTCAGCTAAGGTAAATGATCCAGTTCGTATGTACTTGAAAGAAATTGG
GGTTGTTCCACTATTAACTGGTGAAGAAGAAAAAGAATTAGCAGTAGCTGTTGATGAAGGCGATTTAGAAGCTAAACAAC
GTCTGGCTGAAGCTAATTTACGTCTTGTAGTATCTATTGCTAAACGCTATGTTGGTCGTGGCATGCAATTTTTGGATTTA
ATTCAAGAAGGTAATATGGGTCTTATGAAAGCAGTTGATAAGTTTGACTATTCTAAAGGTTTTAAATTTTCAACTTATGC
AACATGGTGGATTCGCCAAGCAATTACACGTGCCATCGCCGACCAAGCACGTACTATTCGTATTCCAGTACATATGGTCG
AAACGATTAATAAATTAGTTAGAGAACAACGTAATTTGTTACAAGAATTAGGACAAGACCCAACGCCAGAACAAATTGCT
GAGCGCATGGAAATGACACCTGATAAAGTACGTGAAATTCTAAAAATTGCTCAAGAACCTGTTTCACTTGAAACTCCTAT
TGGTGAAGAAGATGATAGCCATCTTGGTGATTTTATTGAAGATGAAGTGATTGAAAATCCAGTAGATTATACAACACGTG
TTGTTTTACGTGAACAATTAGATGAAGTTTTAGATACATTAACTGACCGTGAAGAAAATGTATTGAGACTACGTTTTGGT
CTTGATGATGGGAAAATGCGTACTTTAGAAGATGTTGGTAAAGTTTTCAACGTTACAAGAGAGCGTATCCGTCAAATTGA
AGCCAAAGCACTCCGCAAACTCCGCCACCCAAGCAGAAGCAAACAATTAAGAGACTTTATTGAGGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-84)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363