Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ACG3JJ_RS03620 Genome accession   NZ_CP171733
Coordinates   681780..684182 (-) Length   800 a.a.
NCBI ID   WP_045407697.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 676780..689182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JJ_RS03600 (ACG3JJ_03600) - 677091..677528 (-) 438 WP_003102732.1 GNAT family N-acetyltransferase -
  ACG3JJ_RS03605 (ACG3JJ_03605) pflB 677587..679914 (-) 2328 WP_003103702.1 formate C-acetyltransferase -
  ACG3JJ_RS03610 (ACG3JJ_03610) dinB 680120..681214 (+) 1095 WP_013793632.1 DNA polymerase IV -
  ACG3JJ_RS03615 (ACG3JJ_03615) - 681247..681702 (-) 456 WP_003107625.1 hypothetical protein -
  ACG3JJ_RS03620 (ACG3JJ_03620) recD/recD2/recDB 681780..684182 (-) 2403 WP_045407697.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACG3JJ_RS03625 (ACG3JJ_03625) lepB 684240..684833 (-) 594 WP_003103516.1 signal peptidase I -
  ACG3JJ_RS03630 (ACG3JJ_03630) rnhC 684842..685756 (-) 915 WP_045407701.1 ribonuclease HIII -
  ACG3JJ_RS03635 (ACG3JJ_03635) zapA 685875..686183 (+) 309 WP_003105645.1 cell division protein ZapA -
  ACG3JJ_RS03640 (ACG3JJ_03640) - 686186..686731 (+) 546 WP_013793635.1 CvpA family protein -
  ACG3JJ_RS03645 (ACG3JJ_03645) mutS/mutS2 686798..689134 (+) 2337 WP_013793636.1 endonuclease MutS2 Machinery gene

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89774.82 Da        Isoelectric Point: 4.5986

>NTDB_id=948527 ACG3JJ_RS03620 WP_045407697.1 681780..684182(-) (recD/recD2/recDB) [Streptococcus parauberis strain DB-M5]
MEYFFSGTVDRIIFENSSNFFKILNLMIEDTDSDFDDFEIIITGTMADIMEGEDYTFWGQLSQHPKYGQQLQLSRYQRAK
PSSSGLIKYFSSDHFKGIGKKTAERIVSLYGDNTIDKILDDPSKLEDINGFSKANREAFVAKLRINYGTEQIIAALVELG
LSNRMAFQIYDQYKEEAVERVRTNPYQLVEDIQGIGFKMSDKLAQEIGIADSAPERFRAALLHSLLEQSISQGDTYIEAR
DLLAYAIDLLEDSRQIECNPAQVAQELSHLISDEKVYNAGTKIFDASLFTAEEGIKNQLQRLLDTPFEKQISQDKIEKEV
QAIEKEFAISYDQVQKDAIYQALTSKVFILTGGPGTGKTTVIRGILEAYARINDIDLNKKDLPIVLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLVVDEFSMVDTWLANQLLGAISSNTQIIIVGDSDQLPSVGPGQVLADLL
KITSLPQIALRKIFRQSADSTIVDLANQMRQGILPVDFRDKKADRSYFDAMPQHVPTMVTKIVASAVKSGIPADEIQILA
PMYKGQAGINNLNQLMQELLNPLDNGTEFVFNEIHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDEIMMD
FDGSEVTYPRNEWLKITLAYAMSIHKSQGSEFQVVILPITRQSGRMLQRNLIYTAVTRSKSKLILLGEHSAFDYAIKNEG
DKRKTFLVQRFDQDLTTESSDQLVKIDTVENSSDSLGQAQNTIAKPLESEEPTILTTANMLSIDPLIGLTDADFKNFFKK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=948527 ACG3JJ_RS03620 WP_045407697.1 681780..684182(-) (recD/recD2/recDB) [Streptococcus parauberis strain DB-M5]
ATGGAATACTTTTTTTCCGGGACTGTTGATCGCATCATTTTCGAAAATAGCAGTAACTTTTTTAAAATCTTAAACCTAAT
GATTGAAGATACCGACAGTGACTTTGATGACTTTGAAATCATCATTACTGGAACCATGGCTGACATCATGGAGGGAGAAG
ATTATACCTTCTGGGGGCAATTAAGCCAACATCCCAAATATGGCCAACAACTGCAACTCAGCCGTTACCAGCGAGCTAAA
CCAAGTTCATCTGGTCTAATCAAGTACTTTTCCAGTGATCATTTTAAAGGAATTGGGAAAAAGACCGCCGAGAGAATTGT
CTCTTTATACGGTGACAATACGATTGATAAAATTCTTGACGACCCTAGTAAGTTAGAGGATATCAACGGCTTTTCAAAAG
CTAACCGAGAAGCCTTTGTAGCTAAGCTAAGAATCAATTACGGAACAGAACAAATCATCGCTGCACTGGTAGAATTAGGA
TTGTCTAATCGGATGGCCTTCCAAATATACGATCAATATAAAGAAGAAGCTGTCGAACGGGTTAGGACTAATCCCTATCA
ACTCGTAGAAGACATCCAAGGCATCGGCTTTAAAATGTCTGATAAATTAGCTCAGGAAATCGGTATAGCTGATTCTGCAC
CTGAACGGTTTCGGGCTGCTCTATTACATAGTTTATTGGAACAATCAATTAGCCAAGGTGATACCTACATCGAGGCGCGT
GATTTATTAGCCTATGCTATTGATTTGTTAGAAGACTCTCGACAAATTGAATGTAATCCTGCGCAAGTTGCCCAAGAATT
AAGTCATTTAATTTCTGATGAAAAAGTTTATAATGCAGGTACTAAAATATTTGATGCCTCTCTATTTACAGCTGAAGAGG
GAATTAAAAATCAACTTCAACGTTTGCTAGATACCCCATTTGAGAAACAAATCAGTCAAGATAAGATTGAAAAAGAAGTA
CAAGCAATTGAGAAGGAATTTGCCATTAGCTATGATCAGGTCCAAAAGGACGCAATTTATCAAGCATTGACCAGCAAGGT
CTTTATCTTAACTGGTGGTCCAGGTACTGGTAAAACAACCGTTATCAGAGGAATTCTAGAAGCTTATGCTCGGATTAATG
ACATTGATTTAAATAAAAAAGATTTACCGATTGTTCTAGCAGCGCCTACTGGTCGAGCTGCTCGTCGGATGAATGAATTA
ACTGGCCTACCAAGTGCCACTATTCATCGTCATTTAGGCTTAAATGGTGACAATGATTACCAAGCCATGGAAGACTACTT
AGACTGTGATTTATTAGTTGTTGATGAATTTTCTATGGTTGATACTTGGTTAGCCAATCAATTATTAGGTGCCATATCAT
CGAATACCCAAATAATCATTGTTGGTGACAGTGACCAGTTACCGTCTGTAGGACCAGGTCAGGTTCTAGCAGATCTTTTG
AAAATTACCAGTCTACCACAAATCGCCCTTCGTAAAATTTTCCGTCAATCAGCTGATTCAACCATCGTTGATTTGGCAAA
TCAAATGCGTCAAGGCATATTGCCAGTAGATTTTCGAGATAAAAAAGCAGACCGTTCTTACTTTGATGCCATGCCTCAAC
ATGTTCCAACCATGGTCACAAAAATTGTCGCTTCTGCTGTTAAAAGTGGTATCCCAGCTGATGAAATTCAGATTCTTGCT
CCCATGTATAAAGGACAAGCAGGCATCAACAATCTCAATCAGCTTATGCAAGAGCTTCTCAATCCATTAGATAATGGTAC
AGAATTTGTCTTTAATGAGATACATTTTCGAAAGGGAGATAAAGTCTTACACTTAGTTAATGATGCCCAATTGAATGTCT
TTAATGGTGATATTGGTTACATTACAGATTTAATTCCAGCCAAGTACACCGAGTCCAAACAAGATGAAATTATGATGGAT
TTTGATGGGTCAGAAGTAACTTATCCTCGCAATGAATGGTTAAAAATCACCTTGGCCTATGCCATGAGTATTCATAAGTC
GCAGGGGAGTGAGTTCCAAGTGGTTATTCTTCCAATCACCCGCCAGAGTGGGCGCATGCTTCAACGGAATCTGATTTATA
CAGCTGTCACAAGGTCAAAGAGTAAATTAATTTTACTGGGTGAGCACTCAGCTTTTGATTATGCAATCAAAAATGAGGGT
GATAAACGAAAAACTTTCCTAGTGCAACGATTTGACCAAGACCTGACAACAGAATCAAGCGACCAATTAGTAAAAATTGA
TACAGTTGAAAACAGTTCGGACAGTCTTGGACAAGCCCAAAATACTATTGCAAAGCCCTTAGAATCTGAAGAGCCAACGA
TTTTAACGACAGCAAATATGTTATCTATTGATCCACTGATTGGCTTGACTGATGCTGATTTCAAAAATTTTTTTAAAAAA
TAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-517)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-706)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.8

93.75

0.401