Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8609_RS07045 Genome accession   NZ_AP028412
Coordinates   1375299..1376267 (+) Length   322 a.a.
NCBI ID   WP_050457999.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12128     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1370299..1381267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8609_RS07020 (I12128_13980) cdsA 1371209..1371934 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  R8609_RS07025 (I12128_13990) - 1371943..1372281 (-) 339 WP_002934880.1 hypothetical protein -
  R8609_RS07030 (I12128_14000) - 1372283..1373590 (-) 1308 WP_002860790.1 NFACT RNA binding domain-containing protein -
  R8609_RS07035 (I12128_14010) mobA 1373652..1374227 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  R8609_RS07040 (I12128_14020) pldA 1374224..1375213 (+) 990 WP_002864239.1 phospholipase A -
  R8609_RS07045 (I12128_14030) ceuB 1375299..1376267 (+) 969 WP_050457999.1 ABC transporter permease Machinery gene
  R8609_RS07050 (I12128_14040) ceuC 1376260..1377198 (+) 939 WP_002884174.1 iron chelate uptake ABC transporter family permease subunit -
  R8609_RS07055 (I12128_14050) ceuD 1377195..1377950 (+) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  R8609_RS07060 (I12128_14060) ceuB 1377963..1378955 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8609_RS07070 (I12128_14070) - 1379181..1379735 (-) 555 WP_002884169.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35413.29 Da        Isoelectric Point: 9.6678

>NTDB_id=94848 R8609_RS07045 WP_050457999.1 1375299..1376267(+) (ceuB) [Campylobacter jejuni strain IDH-12128]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLAALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKA
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=94848 R8609_RS07045 WP_050457999.1 1375299..1376267(+) (ceuB) [Campylobacter jejuni strain IDH-12128]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGCAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGCT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991

Multiple sequence alignment