Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   ACG3JF_RS07435 Genome accession   NZ_CP171732
Coordinates   1469660..1469959 (+) Length   99 a.a.
NCBI ID   WP_259966510.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1464660..1474959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS07400 (ACG3JF_07400) - 1464677..1466533 (+) 1857 WP_013794401.1 DUF859 family phage minor structural protein -
  ACG3JF_RS07405 (ACG3JF_07405) - 1466582..1466920 (+) 339 WP_013794400.1 DUF1366 domain-containing protein -
  ACG3JF_RS07410 (ACG3JF_07410) - 1466983..1467132 (+) 150 WP_259966511.1 hypothetical protein -
  ACG3JF_RS07415 (ACG3JF_07415) - 1467136..1467600 (+) 465 WP_013794399.1 phage holin family protein -
  ACG3JF_RS07420 (ACG3JF_07420) - 1467593..1468318 (+) 726 WP_013794398.1 peptidoglycan amidohydrolase family protein -
  ACG3JF_RS07425 (ACG3JF_07425) comGC 1468971..1469291 (+) 321 WP_013794397.1 competence type IV pilus major pilin ComGC Machinery gene
  ACG3JF_RS07430 (ACG3JF_07430) comGD 1469281..1469688 (+) 408 WP_243619590.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACG3JF_RS07435 (ACG3JF_07435) comGE 1469660..1469959 (+) 300 WP_259966510.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACG3JF_RS07440 (ACG3JF_07440) comGF/cglF 1469937..1470374 (+) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACG3JF_RS07445 (ACG3JF_07445) comGG 1470403..1470849 (+) 447 WP_238570152.1 competence type IV pilus minor pilin ComGG -
  ACG3JF_RS07450 (ACG3JF_07450) comGH 1470956..1471912 (+) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  ACG3JF_RS07455 (ACG3JF_07455) - 1471968..1473161 (+) 1194 WP_003108638.1 acetate kinase -
  ACG3JF_RS07460 (ACG3JF_07460) - 1473272..1473484 (+) 213 WP_003108636.1 helix-turn-helix transcriptional regulator -
  ACG3JF_RS07465 (ACG3JF_07465) - 1473477..1473929 (+) 453 WP_003108634.1 hypothetical protein -
  ACG3JF_RS07470 (ACG3JF_07470) - 1473938..1474591 (+) 654 WP_013794395.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11260.23 Da        Isoelectric Point: 7.3987

>NTDB_id=948468 ACG3JF_RS07435 WP_259966510.1 1469660..1469959(+) (comGE) [Streptococcus parauberis strain DB-M3]
MVLIKKQKIKGYILFESLLALGILVYIVLVILGAIEQYQQLHNRYIQEEEALNAAISAIHTQKDSLAINNVEIIVHSTAK
EMRVNDKSKELFHVTKISD

Nucleotide


Download         Length: 300 bp        

>NTDB_id=948468 ACG3JF_RS07435 WP_259966510.1 1469660..1469959(+) (comGE) [Streptococcus parauberis strain DB-M3]
GTGGTACTTATAAAAAAACAAAAAATTAAAGGTTATATCCTTTTTGAAAGTCTTCTTGCTTTAGGTATTCTTGTTTATAT
TGTATTAGTTATTTTAGGCGCAATTGAGCAATATCAACAACTTCATAATCGGTACATACAGGAAGAAGAGGCTCTAAATG
CTGCAATATCAGCTATTCATACTCAAAAGGACAGTCTGGCTATTAATAATGTAGAAATTATTGTTCATTCAACAGCAAAG
GAAATGAGAGTCAATGACAAAAGTAAAGAGTTGTTTCATGTTACAAAAATTAGTGACTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.708

96.97

0.414
  comGE Streptococcus mutans UA159

42.708

96.97

0.414