Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACG3JF_RS06680 Genome accession   NZ_CP171732
Coordinates   1343150..1343923 (+) Length   257 a.a.
NCBI ID   WP_003107474.1    Uniprot ID   A0ABN0INT3
Organism   Streptococcus parauberis strain DB-M3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1338150..1348923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS06660 (ACG3JF_06660) mreD 1338897..1339349 (+) 453 WP_081113126.1 rod shape-determining protein MreD -
  ACG3JF_RS06665 (ACG3JF_06665) - 1339445..1340800 (+) 1356 WP_013793577.1 CHAP domain-containing protein -
  ACG3JF_RS06670 (ACG3JF_06670) - 1340909..1341871 (+) 963 WP_003103806.1 ribose-phosphate diphosphokinase -
  ACG3JF_RS06675 (ACG3JF_06675) - 1341982..1343160 (+) 1179 WP_003107475.1 pyridoxal phosphate-dependent aminotransferase -
  ACG3JF_RS06680 (ACG3JF_06680) recO 1343150..1343923 (+) 774 WP_003107474.1 DNA repair protein RecO Machinery gene
  ACG3JF_RS06685 (ACG3JF_06685) plsX 1344071..1345084 (+) 1014 WP_003108981.1 phosphate acyltransferase PlsX -
  ACG3JF_RS06690 (ACG3JF_06690) - 1345071..1345313 (+) 243 WP_003104799.1 acyl carrier protein -
  ACG3JF_RS06695 (ACG3JF_06695) purC 1345459..1346166 (+) 708 WP_041828391.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30009.29 Da        Isoelectric Point: 5.5416

>NTDB_id=948458 ACG3JF_RS06680 WP_003107474.1 1343150..1343923(+) (recO) [Streptococcus parauberis strain DB-M3]
METSQSHGIVLYNKNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLSSVIQPLTAADFILKLNDIGLSYIEDYNQVETYKK
INQDIFTLSYATYITALTDAALKDNEIDAQLFAFLKKTLDLMEEGLDYEVMTNIFEVQILDRFGVRLNFHDCVFCHRTGL
PFDFSHKYSGVLCPQHYHEDIHRNHLDPNVVYLLDQFQAIHFDELKVISLKPEMKEKLRLFIDELYDDYVGIHLKSKKFI
DDLSTWGQIMKPSSEDN

Nucleotide


Download         Length: 774 bp        

>NTDB_id=948458 ACG3JF_RS06680 WP_003107474.1 1343150..1343923(+) (recO) [Streptococcus parauberis strain DB-M3]
ATGGAAACTAGTCAGTCACATGGTATTGTTCTATATAATAAGAACTTTCGAGAAGATGATAAGTTAGTTAAAATCTTCAC
TGAGCAAGCTGGCAAACGGATGTTTTTTGTTAAGCATGCAGGGAAATCCAAGTTAAGTTCAGTGATTCAGCCCCTAACAG
CCGCTGATTTTATCTTAAAATTAAACGACATTGGCTTATCTTATATAGAAGATTATAATCAAGTGGAAACTTATAAAAAA
ATTAATCAAGATATTTTTACCTTGTCTTATGCCACTTATATTACGGCTTTAACCGATGCAGCTTTAAAAGATAATGAGAT
TGATGCACAACTCTTTGCCTTTCTTAAAAAGACTTTAGATTTAATGGAAGAGGGTTTAGATTATGAAGTAATGACTAACA
TCTTTGAGGTTCAAATATTGGATCGCTTTGGGGTCAGATTAAATTTTCATGATTGTGTCTTTTGTCACCGGACAGGACTG
CCTTTTGATTTTTCGCATAAATATTCAGGTGTACTTTGTCCACAGCACTATCATGAAGATATTCACAGAAATCACTTAGA
TCCAAATGTAGTTTACTTATTAGATCAGTTTCAAGCCATTCACTTTGATGAGTTGAAAGTTATTTCTTTAAAACCGGAAA
TGAAGGAAAAACTCCGTTTGTTTATTGATGAATTGTATGACGATTATGTCGGAATTCATCTAAAGAGTAAAAAATTTATT
GACGACTTGTCCACATGGGGACAAATTATGAAGCCCAGCTCAGAGGATAATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

67.331

97.665

0.658