Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ACG3JF_RS05535 Genome accession   NZ_CP171732
Coordinates   1129645..1130094 (-) Length   149 a.a.
NCBI ID   WP_003107776.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124645..1135094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS05520 (ACG3JF_05520) - 1124850..1126109 (+) 1260 WP_013794469.1 NAD(P)H-dependent oxidoreductase -
  ACG3JF_RS05525 (ACG3JF_05525) - 1126159..1127943 (-) 1785 WP_013794470.1 ABC transporter ATP-binding protein -
  ACG3JF_RS05530 (ACG3JF_05530) rcrP 1127943..1129652 (-) 1710 WP_003107775.1 ABC transporter ATP-binding protein Regulator
  ACG3JF_RS05535 (ACG3JF_05535) rcrR 1129645..1130094 (-) 450 WP_003107776.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ACG3JF_RS05540 (ACG3JF_05540) - 1130301..1131317 (+) 1017 WP_003107779.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  ACG3JF_RS05545 (ACG3JF_05545) galU 1131339..1132244 (+) 906 WP_003103063.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACG3JF_RS05550 (ACG3JF_05550) - 1132267..1132941 (-) 675 WP_003107780.1 rhomboid family intramembrane serine protease -
  ACG3JF_RS05555 (ACG3JF_05555) - 1132938..1133465 (-) 528 WP_004235118.1 5-formyltetrahydrofolate cyclo-ligase -
  ACG3JF_RS05560 (ACG3JF_05560) - 1133578..1134945 (+) 1368 WP_003105465.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17278.97 Da        Isoelectric Point: 6.9820

>NTDB_id=948449 ACG3JF_RS05535 WP_003107776.1 1129645..1130094(-) (rcrR) [Streptococcus parauberis strain DB-M3]
MSRIIADLRDLTHQIEQITEEIAQAYHIDQLAGPQGHVLVFLERNQDREIFVKDIEKTLNISKSVSSNLVKRMEKNGFIE
VVPSIADKRFKQVVLTEVGKEKIPLLHECRKAIENYFFKEISKDDFMTVKHVIDQLKLNIAEYKGEKNA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=948449 ACG3JF_RS05535 WP_003107776.1 1129645..1130094(-) (rcrR) [Streptococcus parauberis strain DB-M3]
ATGTCACGTATTATTGCTGATCTTCGTGATTTGACTCATCAAATTGAACAAATCACTGAAGAAATTGCGCAAGCTTACCA
TATTGACCAGTTAGCTGGGCCTCAAGGCCATGTACTTGTTTTCTTGGAAAGAAATCAGGACCGAGAAATCTTTGTTAAAG
ATATTGAAAAAACATTAAATATCTCAAAATCAGTTTCCAGTAATTTAGTTAAACGCATGGAAAAAAATGGTTTTATTGAA
GTAGTTCCTTCAATAGCAGATAAACGTTTTAAACAAGTCGTATTAACAGAGGTTGGAAAAGAAAAGATTCCTTTGTTGCA
TGAATGCCGGAAGGCTATCGAAAATTATTTTTTCAAGGAAATATCAAAAGATGACTTTATGACAGTCAAGCATGTCATAG
ACCAGCTAAAACTAAATATTGCTGAATACAAAGGAGAGAAAAATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(32-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

93.96

0.403