Detailed information NTG0948403

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACG3JF_RS00285
• Genome accession: NZ_CP171732
• Coordinates: 59884..60993 (+)
• Length: 369 a.a.
• NCBI ID: WP_003105447.1
• Uniprot ID: A0ABN0ITI9
• Organism: Streptococcus parauberis strain DB-M3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 54884..65993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JF_RS00260 (ACG3JF_00260)	-	55188..56318 (+)	1131	WP_013793808.1	aminotransferase	-
ACG3JF_RS00265 (ACG3JF_00265)	-	56333..57145 (+)	813	WP_003104103.1	transporter substrate-binding domain-containing protein	-
ACG3JF_RS00270 (ACG3JF_00270)	rpsU	57273..57449 (+)	177	WP_000048058.1	30S ribosomal protein S21	-
ACG3JF_RS00275 (ACG3JF_00275)	mscL	57557..57937 (-)	381	WP_003104850.1	large conductance mechanosensitive channel protein MscL	-
ACG3JF_RS00280 (ACG3JF_00280)	dnaG	58064..59875 (+)	1812	WP_003106531.1	DNA primase	-
ACG3JF_RS00285 (ACG3JF_00285)	rpoS	59884..60993 (+)	1110	WP_003105447.1	RNA polymerase sigma factor RpoD	Regulator
ACG3JF_RS00290 (ACG3JF_00290)	-	61147..61485 (+)	339	WP_013793810.1	metal-sulfur cluster assembly factor	-
ACG3JF_RS00295 (ACG3JF_00295)	rfbD	61577..62428 (+)	852	WP_003103693.1	dTDP-4-dehydrorhamnose reductase	-
ACG3JF_RS00300 (ACG3JF_00300)	cps2T	62544..63698 (+)	1155	WP_013793811.1	beta 1-4 rhamnosyltransferase Cps2T	-
ACG3JF_RS00305 (ACG3JF_00305)	-	63688..64620 (+)	933	WP_003105744.1	glycosyltransferase family 2 protein	-
ACG3JF_RS00310 (ACG3JF_00310)	-	64624..65427 (+)	804	WP_003103004.1	ABC transporter permease	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42201.87 Da
• Isoelectric Point: 4.4893

>NTDB_id=948403 ACG3JF_RS00285 WP_003105447.1 59884..60993(+) (rpoS) [Streptococcus parauberis strain DB-M3]
MAKENDITTFNVQVADFIRNHKKEGSAVDDEITEKLVIPFVLDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEQLIGSNSAKVNDPVRMYLKEIGVVPLLTGEEEKELAVAVDEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=948403 ACG3JF_RS00285 WP_003105447.1 59884..60993(+) (rpoS) [Streptococcus parauberis strain DB-M3]
ATGGCCAAAGAAAACGATATTACAACTTTTAACGTTCAAGTTGCAGATTTTATTCGTAATCATAAAAAAGAAGGATCTGC
AGTTGATGATGAAATTACAGAAAAATTAGTTATCCCATTCGTTTTAGATGCTGACCAAATTGATGATTTATTAGAACGCC
TGACTGATGGCGGTATTTCTATCACAGATAAAGAAGGAAATCCTTCATCTAAATATGTTGTTGAAGAACCAAAACCTGAA
GAACTTACAGATGAGCAATTAATCGGAAGTAATTCAGCTAAGGTAAATGATCCAGTTCGTATGTACTTGAAAGAAATTGG
GGTTGTTCCACTATTAACTGGTGAAGAAGAAAAAGAATTAGCAGTAGCTGTTGATGAAGGCGATTTAGAAGCTAAACAAC
GTCTGGCTGAAGCTAATTTACGTCTTGTAGTATCTATTGCTAAACGCTATGTTGGTCGTGGCATGCAATTTTTGGATTTA
ATTCAAGAAGGTAATATGGGTCTTATGAAAGCAGTTGATAAGTTTGACTATTCTAAAGGTTTTAAATTTTCAACTTATGC
AACATGGTGGATTCGCCAAGCAATTACACGTGCCATCGCCGACCAAGCACGTACTATTCGTATTCCAGTACATATGGTCG
AAACGATTAATAAATTAGTTAGAGAACAACGTAATTTGTTACAAGAATTAGGACAAGACCCAACGCCAGAACAAATTGCT
GAGCGCATGGAAATGACACCTGATAAAGTACGTGAAATTCTAAAAATTGCTCAAGAACCTGTTTCACTTGAAACTCCTAT
TGGTGAAGAAGATGATAGCCATCTTGGTGATTTTATTGAAGATGAAGTGATTGAAAATCCAGTAGATTATACAACACGTG
TTGTTTTACGTGAACAATTAGATGAAGTTTTAGATACATTAACTGACCGTGAAGAAAATGTATTGAGACTACGTTTTGGT
CTTGATGATGGGAAAATGCGTACTTTAGAAGATGTTGGTAAAGTTTTCAACGTTACAAGAGAGCGTATCCGTCAAATTGA
AGCCAAAGCACTCCGCAAACTCCGCCACCCAAGCAGAAGCAAACAATTAAGAGACTTTATTGAGGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-84)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363