Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WDV80_RS06110 Genome accession   NZ_CP147733
Coordinates   1242001..1243365 (-) Length   454 a.a.
NCBI ID   WP_001085192.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1237001..1248365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS06095 (WDV80_06095) - 1238423..1239588 (+) 1166 Protein_1175 IS30-like element ISSag9 family transposase -
  WDV80_RS06100 (WDV80_06100) - 1239895..1241214 (-) 1320 WP_000759715.1 FAD-containing oxidoreductase -
  WDV80_RS06105 (WDV80_06105) - 1241368..1241865 (-) 498 WP_000214743.1 carbonic anhydrase -
  WDV80_RS06110 (WDV80_06110) radA 1242001..1243365 (-) 1365 WP_001085192.1 DNA repair protein RadA Machinery gene
  WDV80_RS06115 (WDV80_06115) - 1243527..1243973 (-) 447 WP_000049186.1 dUTP diphosphatase -
  WDV80_RS06125 (WDV80_06125) - 1244168..1245094 (-) 927 WP_000723856.1 alpha/beta hydrolase -
  WDV80_RS06130 (WDV80_06130) - 1245203..1246807 (-) 1605 WP_000170432.1 CTP synthase -
  WDV80_RS06135 (WDV80_06135) rpoE 1247080..1247655 (-) 576 WP_000418426.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49634.90 Da        Isoelectric Point: 6.1917

>NTDB_id=948384 WDV80_RS06110 WP_001085192.1 1242001..1243365(-) (radA) [Streptococcus agalactiae strain SagR272_TC]
MAKKKSVFTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIE
KIKPDFLIIDSIQTIMSPEVSSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFENAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIR
RVTRIEQRINEASKLGFTKIYAPKNSLAGIEIPKGIDVIGVTTVSQVLKAVFST

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=948384 WDV80_RS06110 WP_001085192.1 1242001..1243365(-) (radA) [Streptococcus agalactiae strain SagR272_TC]
GTGGCTAAGAAAAAATCAGTCTTCACCTGTCAAGAGTGTGGTTACCAATCACCTAAGTATTTGGGACGTTGTCCAAATTG
CTCAGCCTGGTCTTCATTTGTAGAAGAGGTTGAAGTTCAAGAAGTTAAAAATGCACGAGTTAGTTTGAACGGTGAAAAGT
CCCGACCGACGAAGTTAAAAGATGTTTCCTCAATTAACTATTCTAGAACTAAGACTGATATGGATGAATTTAACCGTGTT
CTAGGAGGCGGTGTTGTACCAGGAAGTTTGGTTCTGATTGGAGGAGACCCTGGGATAGGTAAATCTACTTTATTACTACA
AGTATCAACTCAGCTAGCTAATAAAGGTACAGTATTATATGTCTCAGGTGAGGAATCTGCAGAACAGATTAAGTTACGAA
GTGAGCGTCTAGGCGATATCGATAATGAATTTTACCTTTATGCCGAGACTAATATGCAAAGTATTCGGTCGGAGATTGAG
AAGATTAAACCAGATTTTCTTATTATTGATTCTATACAAACTATTATGAGTCCCGAAGTATCAAGTGTCCAAGGCTCTGT
TAGCCAAGTTCGCGAAGTGACCGCTGAGTTGATGCAGTTAGCTAAAACTAATAATATTGCTACTTTTATTGTAGGTCATG
TGACTAAGGAGGGAACATTAGCAGGCCCTCGAATGCTAGAACATATGGTGGATACGGTTCTTTATTTTGAAGGGGAGCGT
CATCACACGTTCCGTATTTTACGGGCAGTCAAAAACCGTTTTGGTTCGACCAATGAAATAGGTATCTTTGAAATGCAGTC
GGGTGGTCTAGTTGAAGTTTTGAATCCAAGTCAAGTTTTTCTTGAAGAACGTTTAGACGGTGCAACAGGATCTGCTATTG
TTGTTACTATGGAAGGAACAAGGCCTATTTTAGCAGAGGTTCAAGCTTTAGTGACTCCAACTGTTTTTGAAAATGCTAAG
CGCACAACCACAGGTCTTGACTTTAATCGTGTCAGTCTTATTATGGCAGTTCTAGAAAAACGTTGTGGTTTATTGCTTCA
AAATCAAGATGCCTATTTAAAATCAGCGGGTGGTGTTAAATTGGATGAACCAGCAATTGATTTAGCTGTAGCTGTAGCTA
TTGCTTCCAGTTACAAAGAAAAACCCACAAATCCACAAGAATCATTTATTGGAGAAATTGGACTCACTGGTGAGATTCGT
CGCGTGACACGTATTGAGCAACGTATTAATGAGGCTAGTAAATTGGGCTTTACTAAAATTTACGCACCAAAGAATTCTCT
AGCTGGGATTGAAATACCTAAAGGCATTGATGTTATTGGTGTGACAACTGTTAGTCAGGTCTTAAAAGCAGTGTTTTCAA
CATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

87.859

99.78

0.877
  radA Streptococcus pneumoniae D39

87.859

99.78

0.877
  radA Streptococcus pneumoniae R6

87.859

99.78

0.877
  radA Streptococcus pneumoniae TIGR4

87.859

99.78

0.877
  radA Streptococcus mitis NCTC 12261

87.859

99.78

0.877
  radA Streptococcus mitis SK321

87.638

99.78

0.874
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.78

0.626