Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   ACG3JH_RS08060 Genome accession   NZ_CP171731
Coordinates   1563176..1565731 (+) Length   851 a.a.
NCBI ID   WP_045407333.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1558176..1570731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JH_RS08035 (ACG3JH_08035) - 1558579..1559457 (+) 879 WP_003102526.1 YitT family protein -
  ACG3JH_RS08040 (ACG3JH_08040) - 1559513..1560391 (+) 879 WP_003102528.1 YitT family protein -
  ACG3JH_RS08045 (ACG3JH_08045) argS 1560427..1562115 (-) 1689 WP_013794518.1 arginine--tRNA ligase -
  ACG3JH_RS08050 (ACG3JH_08050) argR 1562402..1562839 (+) 438 WP_003105697.1 arginine repressor -
  ACG3JH_RS08055 (ACG3JH_08055) - 1562836..1563189 (+) 354 WP_003104802.1 YlbF family regulator -
  ACG3JH_RS08060 (ACG3JH_08060) hexA 1563176..1565731 (+) 2556 WP_045407333.1 DNA mismatch repair protein MutS Machinery gene
  ACG3JH_RS08065 (ACG3JH_08065) - 1566025..1566354 (-) 330 WP_003108890.1 metalloregulator ArsR/SmtB family transcription factor -
  ACG3JH_RS08070 (ACG3JH_08070) - 1566370..1566984 (-) 615 WP_013794516.1 CadD family cadmium resistance transporter -
  ACG3JH_RS08075 (ACG3JH_08075) - 1567669..1568241 (+) 573 WP_013794515.1 Ltp family lipoprotein -
  ACG3JH_RS08080 (ACG3JH_08080) - 1568612..1568905 (-) 294 WP_041828671.1 hypothetical protein -
  ACG3JH_RS08085 (ACG3JH_08085) - 1569180..1569467 (-) 288 WP_013794514.1 DUF4298 domain-containing protein -
  ACG3JH_RS08090 (ACG3JH_08090) - 1569539..1569685 (-) 147 WP_165848363.1 hypothetical protein -
  ACG3JH_RS08095 (ACG3JH_08095) - 1570275..1570697 (-) 423 WP_013794513.1 DUF1492 domain-containing protein -

Sequence


Protein


Download         Length: 851 a.a.        Molecular weight: 95470.08 Da        Isoelectric Point: 4.9392

>NTDB_id=948369 ACG3JH_RS08060 WP_045407333.1 1563176..1565731(+) (hexA) [Streptococcus parauberis strain DB-M1]
MTEPKVSPGMQQYLDIKVNYPDAFLLFRMGDFYELFYDDAVKAAQILEIGLTSRNKNAENPIPMAGVPHHSAQQYIDVLI
EQGYKVAIAEQMEDPKKAVGVVKREVVQVITPGTVVDSAKPTSSNNFLVAIDYNGSNYGLAYMDLATGEFFVTALEDFAS
ICSEILNLKAKEVLVGYDLSGQEEEILVKQYNLLLSYEKEEIDDSKLLDNNLSIIEKMVASKLLAYVHHTQMRDLIHLQK
VVHYEINDYLQMSYATKSSLDLLENARTGKKHGSLYWLLDQTKTAMGMRLLRAWIDRPLISKEAVIQRQEIIQVLLDNFI
ERSDLSDSLKGVYDIERLSSRVSFGKVNPKDLLQLGHTLAQVPTIKAILESMDSPHLEGLIAGIDPIPELEHLIQSAIDP
DAPATISEGNIIKTGFDKQLDHYRKVMKEGTGWIADIEMKERQASGINNLKIDYNKKDGYYFHVTNSNLSLVPDHFFRKA
TLKNSERYGTMELAKIEGQMLEAREESSTLEYDIFMQLRSRVENYIDRLQQLAKSIAAVDVLQSLAVVAEKNHYIRPSFT
DHQEINIINGRHAVVEKVMSVKEYIPNTIQFSQETNIQLITGPNMSGKSTYMRQLALTSIMAQLGSYVAADLAEIPIFDA
IFTRIGAADDLISGQSTFMVEMMEANQAIKGASPRSLILFDELGRGTATYDGMALAQSIIEFIHDHVGAKTMFATHYHEL
TDLSSRLKSLTNVHVATLEENGEVTFLHKIAQGPADKSYGIHVAKIAGLPKELLQRADAILQKLENQSTQLTLVANAEES
QQAQTDKNQQLELFAPDAEENQVIEQLKAMDVINMTPMEAMTALYELKKNL

Nucleotide


Download         Length: 2556 bp        

>NTDB_id=948369 ACG3JH_RS08060 WP_045407333.1 1563176..1565731(+) (hexA) [Streptococcus parauberis strain DB-M1]
ATGACAGAGCCTAAAGTTTCTCCTGGAATGCAACAGTATCTGGACATAAAAGTAAATTATCCAGATGCTTTTTTGCTTTT
TAGGATGGGTGACTTTTACGAATTATTTTATGACGATGCTGTTAAAGCAGCTCAAATATTAGAAATTGGTTTAACCAGTC
GCAACAAGAATGCTGAAAACCCAATACCCATGGCGGGAGTGCCCCACCATTCAGCACAACAATATATTGATGTTTTAATT
GAGCAAGGTTATAAAGTAGCCATTGCTGAACAAATGGAAGATCCTAAAAAAGCTGTCGGCGTTGTTAAACGTGAAGTGGT
TCAAGTGATTACTCCCGGAACTGTTGTCGATTCAGCTAAACCAACCAGTTCAAATAATTTCTTAGTTGCGATTGATTATA
ATGGTAGCAATTATGGTTTGGCTTATATGGACCTAGCTACTGGTGAATTCTTTGTGACAGCTCTGGAGGATTTCGCAAGT
ATTTGCAGTGAAATCTTAAATTTGAAAGCTAAAGAAGTTCTTGTTGGATATGACTTAAGTGGCCAAGAAGAAGAAATTTT
AGTAAAACAATATAATCTATTACTATCTTATGAAAAGGAAGAAATTGATGACAGTAAACTTTTAGATAATAATTTGTCAA
TCATTGAAAAAATGGTCGCAAGTAAGTTATTAGCTTATGTGCACCATACGCAAATGCGCGACCTAATTCACCTTCAAAAA
GTCGTTCACTATGAGATAAACGATTACTTACAAATGTCTTATGCTACTAAATCAAGCTTAGATCTACTAGAAAATGCTCG
AACCGGGAAAAAACATGGCAGTCTATACTGGTTATTAGATCAAACCAAGACAGCAATGGGGATGCGACTTCTGCGTGCTT
GGATTGACCGTCCTCTAATTAGTAAAGAAGCTGTAATCCAGCGCCAAGAAATTATTCAAGTCTTACTTGATAATTTCATT
GAGCGTTCTGATTTAAGTGATAGCTTAAAAGGTGTCTATGACATTGAAAGACTTTCAAGTCGTGTATCTTTCGGTAAGGT
TAATCCCAAAGACTTATTGCAACTAGGACATACCTTAGCTCAAGTGCCAACAATTAAAGCCATTTTGGAAAGTATGGATA
GTCCTCACTTAGAGGGACTCATTGCTGGTATCGACCCAATCCCTGAGTTAGAACACCTAATTCAATCAGCTATTGATCCA
GATGCGCCTGCAACAATTAGTGAAGGTAATATCATCAAAACTGGTTTTGACAAACAATTGGATCATTATCGGAAGGTCAT
GAAAGAAGGCACGGGCTGGATAGCAGATATTGAAATGAAAGAGCGCCAAGCAAGTGGTATTAACAATCTTAAAATTGATT
ACAATAAAAAAGATGGTTACTATTTCCATGTCACAAACTCTAATTTATCCCTTGTTCCGGACCATTTCTTTAGGAAAGCA
ACCTTAAAAAATTCTGAGCGTTATGGAACCATGGAATTAGCTAAAATTGAAGGACAAATGTTGGAAGCTAGAGAAGAATC
CTCAACTCTTGAGTATGATATCTTTATGCAATTGCGCTCACGAGTGGAAAATTATATTGATCGCCTTCAACAACTTGCCA
AATCAATTGCTGCCGTCGATGTCCTCCAAAGTTTAGCAGTTGTGGCTGAGAAAAACCATTACATCAGACCAAGTTTCACC
GACCATCAAGAAATTAATATCATTAATGGTCGCCATGCAGTGGTTGAAAAAGTGATGAGCGTCAAAGAATATATTCCCAA
CACCATTCAATTTAGTCAAGAAACGAATATCCAGCTCATTACAGGACCTAATATGAGTGGTAAATCAACTTATATGAGGC
AGTTAGCTTTAACCAGTATTATGGCCCAACTTGGTTCTTATGTGGCAGCAGACCTTGCAGAAATTCCCATTTTTGATGCT
ATCTTTACAAGAATTGGCGCAGCAGATGACCTGATTTCTGGACAATCGACATTCATGGTCGAAATGATGGAGGCCAACCA
AGCAATCAAAGGCGCAAGCCCACGGTCTTTAATTCTATTTGACGAATTAGGAAGAGGAACAGCTACTTATGATGGCATGG
CGCTAGCTCAATCAATTATTGAGTTTATCCATGACCACGTGGGAGCAAAAACAATGTTTGCCACCCATTATCATGAGTTG
ACAGACCTGTCAAGCCGCCTAAAAAGCCTGACAAATGTCCATGTCGCAACCTTGGAAGAAAATGGCGAAGTGACTTTCCT
TCATAAGATTGCCCAAGGACCGGCGGATAAATCCTACGGCATCCACGTGGCCAAAATTGCTGGGCTGCCAAAAGAACTCT
TACAACGTGCGGATGCCATTCTCCAAAAATTAGAGAACCAATCGACTCAGTTGACACTAGTTGCCAATGCAGAGGAATCC
CAACAAGCACAGACCGACAAGAATCAACAATTGGAACTCTTTGCCCCAGATGCTGAGGAGAACCAAGTCATTGAGCAATT
GAAAGCCATGGATGTTATCAATATGACCCCAATGGAGGCTATGACTGCCCTCTATGAACTGAAAAAGAACTTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

70.956

99.53

0.706

  mutS Pseudomonas stutzeri strain ATCC 17587

36.583

100

0.375