Detailed information NTG0948253

Bioinformatically predicted

Overview

• Name: luxP
• Type: Regulator
• Locus tag: WDM00_RS13920
• Genome accession: NZ_CP147727
• Coordinates: 81342..82436 (+)
• Length: 364 a.a.
• NCBI ID: WP_142737980.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain CNCTC 6536
• Function: autoinducer sensor (predicted from homology) Competence regulation

Genomic Context

Location: 76342..87436

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDM00_RS13890 (WDM00_13900)	-	77502..77753 (-)	252	WP_001885413.1	YgjV family protein	-
WDM00_RS13895 (WDM00_13905)	-	78166..78486 (-)	321	WP_001089529.1	DUF496 family protein	-
WDM00_RS13900 (WDM00_13910)	-	78674..78871 (+)	198	WP_001246071.1	hypothetical protein	-
WDM00_RS13905 (WDM00_13915)	-	78913..79563 (+)	651	WP_001025625.1	YceH family protein	-
WDM00_RS13910 (WDM00_13920)	-	79563..79868 (+)	306	WP_000448829.1	GIY-YIG nuclease family protein	-
WDM00_RS13915 (WDM00_13925)	traF	79970..81130 (+)	1161	WP_001025858.1	conjugal transfer protein TraF	-
WDM00_RS13920 (WDM00_13930)	luxP	81342..82436 (+)	1095	WP_142737980.1	substrate-binding domain-containing protein	Regulator
WDM00_RS13925 (WDM00_13935)	luxQ	82454..85027 (+)	2574	WP_142737981.1	quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ	Regulator
WDM00_RS13930 (WDM00_13940)	-	85019..85684 (-)	666	WP_367007958.1	flagellar brake protein	-
WDM00_RS13935 (WDM00_13945)	-	85928..86446 (-)	519	WP_000914963.1	hypothetical protein	-
WDM00_RS13940 (WDM00_13950)	-	86685..87083 (-)	399	WP_142737982.1	YgiW/YdeI family stress tolerance OB fold protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41182.74 Da
• Isoelectric Point: 6.1085

>NTDB_id=948253 WDM00_RS13920 WP_142737980.1 81342..82436(+) (luxP) [Vibrio cholerae strain CNCTC 6536]
MKRKLISPLFLIAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQEQPVIISVVYPGQQISD
YWVRNINAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARISELKARAFRYSDR

Nucleotide

• Length: 1095 bp

>NTDB_id=948253 WDM00_RS13920 WP_142737980.1 81342..82436(+) (luxP) [Vibrio cholerae strain CNCTC 6536]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGAAACATCAATGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGACTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGATACCTTCATTCAAGATATGAACGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACTGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
CGCTTTGGGGGCTGCCCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTTCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein domain (Peripla_BP_4) (69-323)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
luxP	Vibrio cholerae strain A1552	99.176	100	0.992