Detailed information NTG0948246

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WDM00_RS11565
• Genome accession: NZ_CP147726
• Coordinates: 2540999..2542006 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain CNCTC 6536
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2535999..2547006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDM00_RS11555 (WDM00_11565)	cysM	2537159..2538046 (+)	888	WP_248436838.1	cysteine synthase CysM	-
WDM00_RS11560 (WDM00_11570)	mutS	2538314..2540902 (+)	2589	WP_367007780.1	DNA mismatch repair protein MutS	-
WDM00_RS11565 (WDM00_11575)	rpoS	2540999..2542006 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
WDM00_RS11570 (WDM00_11580)	nlpD	2542080..2543015 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
WDM00_RS11575 (WDM00_11585)	-	2543015..2543641 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
WDM00_RS11580 (WDM00_11590)	surE	2543634..2544386 (-)	753	WP_185841365.1	5'/3'-nucleotidase SurE	-
WDM00_RS11585 (WDM00_11595)	truD	2544388..2545473 (-)	1086	WP_142737819.1	tRNA pseudouridine(13) synthase TruD	-
WDM00_RS11590 (WDM00_11600)	ispF	2545503..2545979 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
WDM00_RS11595 (WDM00_11605)	ispD	2545976..2546674 (-)	699	WP_142737820.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
WDM00_RS11600 (WDM00_11610)	ftsB	2546671..2546955 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=948246 WDM00_RS11565 WP_000116735.1 2540999..2542006(-) (rpoS) [Vibrio cholerae strain CNCTC 6536]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=948246 WDM00_RS11565 WP_000116735.1 2540999..2542006(-) (rpoS) [Vibrio cholerae strain CNCTC 6536]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGAGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997