Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   WDM00_RS11430 Genome accession   NZ_CP147726
Coordinates   2514643..2515161 (-) Length   172 a.a.
NCBI ID   WP_001130229.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNCTC 6536     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2509643..2520161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDM00_RS11405 (WDM00_11415) rimM 2509752..2510306 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  WDM00_RS11410 (WDM00_11420) rpsP 2510334..2510582 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  WDM00_RS11415 (WDM00_11425) ffh 2510818..2512203 (-) 1386 WP_000462715.1 signal recognition particle protein -
  WDM00_RS11420 (WDM00_11430) - 2512416..2513210 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  WDM00_RS11425 (WDM00_11435) - 2513293..2514573 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  WDM00_RS11430 (WDM00_11440) luxS 2514643..2515161 (-) 519 WP_001130229.1 S-ribosylhomocysteine lyase Regulator
  WDM00_RS11435 (WDM00_11445) gshA 2515210..2516784 (-) 1575 WP_142737801.1 glutamate--cysteine ligase -
  WDM00_RS11440 (WDM00_11450) - 2516896..2519751 (-) 2856 WP_185841362.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19108.96 Da        Isoelectric Point: 5.2199

>NTDB_id=948243 WDM00_RS11430 WP_001130229.1 2514643..2515161(-) (luxS) [Vibrio cholerae strain CNCTC 6536]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKVIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=948243 WDM00_RS11430 WP_001130229.1 2514643..2515161(-) (luxS) [Vibrio cholerae strain CNCTC 6536]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTATTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTGGAAGAAGCCAAAGTGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994