Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   WDM00_RS09285 Genome accession   NZ_CP147726
Coordinates   2034319..2035686 (-) Length   455 a.a.
NCBI ID   WP_001888250.1    Uniprot ID   Q9KT84
Organism   Vibrio cholerae strain CNCTC 6536     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2029319..2040686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDM00_RS09250 (WDM00_09250) moaE 2030032..2030493 (-) 462 WP_142737314.1 molybdopterin synthase catalytic subunit MoaE -
  WDM00_RS09255 (WDM00_09255) moaD 2030495..2030740 (-) 246 WP_076025716.1 molybdopterin synthase sulfur carrier subunit -
  WDM00_RS09260 (WDM00_09260) moaC 2030737..2031216 (-) 480 WP_000080913.1 cyclic pyranopterin monophosphate synthase MoaC -
  WDM00_RS09265 (WDM00_09265) moaB 2031227..2031739 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  WDM00_RS09270 (WDM00_09270) moaA 2031799..2032788 (-) 990 WP_142737315.1 GTP 3',8-cyclase MoaA -
  WDM00_RS09275 (WDM00_09275) - 2033095..2033985 (+) 891 WP_053033875.1 YvcK family protein -
  WDM00_RS09280 (WDM00_09280) luxU 2033974..2034315 (-) 342 WP_053033874.1 quorum-sensing phosphorelay protein LuxU -
  WDM00_RS09285 (WDM00_09285) luxO 2034319..2035686 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  WDM00_RS09290 (WDM00_09290) uvrB 2036117..2038147 (-) 2031 WP_000029988.1 excinuclease ABC subunit UvrB -
  WDM00_RS09300 (WDM00_09300) rsxA 2039029..2039610 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  WDM00_RS09305 (WDM00_09305) rsxB 2039610..2040197 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50839.12 Da        Isoelectric Point: 5.5755

>NTDB_id=948238 WDM00_RS09285 WP_001888250.1 2034319..2035686(-) (luxO) [Vibrio cholerae strain CNCTC 6536]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=948238 WDM00_RS09285 WP_001888250.1 2034319..2035686(-) (luxO) [Vibrio cholerae strain CNCTC 6536]
ATGGTAGAAGACACGGCATCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGACGTCGCGAGCCGGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
TGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAGGCGATTCATGCCGCGAGCAAGCGCGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTTAAAGGGGCTTTTACCGGAGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTGCTGCGCTTCATCCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCGACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGGCGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGCGGTGATGATGTGATCGAGATTGCTTACTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGTCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCTTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

100

100

1
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38