Detailed information NTG0948222

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACG3JG_RS02580
• Genome accession: NZ_CP171730
• Coordinates: 502076..503185 (+)
• Length: 369 a.a.
• NCBI ID: WP_003105447.1
• Uniprot ID: A0ABN0ITI9
• Organism: Streptococcus parauberis strain DB-WT
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 497076..508185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JG_RS02555 (ACG3JG_02555)	-	497379..498509 (+)	1131	WP_013793808.1	aminotransferase	-
ACG3JG_RS02560 (ACG3JG_02560)	-	498524..499336 (+)	813	WP_003104103.1	transporter substrate-binding domain-containing protein	-
ACG3JG_RS02565 (ACG3JG_02565)	rpsU	499464..499640 (+)	177	WP_000048058.1	30S ribosomal protein S21	-
ACG3JG_RS02570 (ACG3JG_02570)	mscL	499749..500129 (-)	381	WP_003104850.1	large conductance mechanosensitive channel protein MscL	-
ACG3JG_RS02575 (ACG3JG_02575)	dnaG	500256..502067 (+)	1812	WP_003106531.1	DNA primase	-
ACG3JG_RS02580 (ACG3JG_02580)	rpoS	502076..503185 (+)	1110	WP_003105447.1	RNA polymerase sigma factor RpoD	Regulator
ACG3JG_RS02585 (ACG3JG_02585)	-	503339..503677 (+)	339	WP_013793810.1	metal-sulfur cluster assembly factor	-
ACG3JG_RS02590 (ACG3JG_02590)	rfbD	503769..504620 (+)	852	WP_003103693.1	dTDP-4-dehydrorhamnose reductase	-
ACG3JG_RS02595 (ACG3JG_02595)	cps2T	504736..505889 (+)	1154	Protein_503	beta 1-4 rhamnosyltransferase Cps2T	-
ACG3JG_RS02600 (ACG3JG_02600)	-	505879..506811 (+)	933	WP_003105744.1	glycosyltransferase family 2 protein	-
ACG3JG_RS02605 (ACG3JG_02605)	-	506815..507618 (+)	804	WP_003103004.1	ABC transporter permease	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42201.87 Da
• Isoelectric Point: 4.4893

>NTDB_id=948222 ACG3JG_RS02580 WP_003105447.1 502076..503185(+) (rpoS) [Streptococcus parauberis strain DB-WT]
MAKENDITTFNVQVADFIRNHKKEGSAVDDEITEKLVIPFVLDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEQLIGSNSAKVNDPVRMYLKEIGVVPLLTGEEEKELAVAVDEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=948222 ACG3JG_RS02580 WP_003105447.1 502076..503185(+) (rpoS) [Streptococcus parauberis strain DB-WT]
ATGGCCAAAGAAAACGATATTACAACTTTTAACGTTCAAGTTGCAGATTTTATTCGTAATCATAAAAAAGAAGGATCTGC
AGTTGATGATGAAATTACAGAAAAATTAGTTATCCCATTCGTTTTAGATGCTGACCAAATTGATGATTTATTAGAACGCC
TGACTGATGGCGGTATTTCTATCACAGATAAAGAAGGAAATCCTTCATCTAAATATGTTGTTGAAGAACCAAAACCTGAA
GAACTTACAGATGAGCAATTAATCGGAAGTAATTCAGCTAAGGTAAATGATCCAGTTCGTATGTACTTGAAAGAAATTGG
GGTTGTTCCACTATTAACTGGTGAAGAAGAAAAAGAATTAGCAGTAGCTGTTGATGAAGGCGATTTAGAAGCTAAACAAC
GTCTGGCTGAAGCTAATTTACGTCTTGTAGTATCTATTGCTAAACGCTATGTTGGTCGTGGCATGCAATTTTTGGATTTA
ATTCAAGAAGGTAATATGGGTCTTATGAAAGCAGTTGATAAGTTTGACTATTCTAAAGGTTTTAAATTTTCAACTTATGC
AACATGGTGGATTCGCCAAGCAATTACACGTGCCATCGCCGACCAAGCACGTACTATTCGTATTCCAGTACATATGGTCG
AAACGATTAATAAATTAGTTAGAGAACAACGTAATTTGTTACAAGAATTAGGACAAGACCCAACGCCAGAACAAATTGCT
GAGCGCATGGAAATGACACCTGATAAAGTACGTGAAATTCTAAAAATTGCTCAAGAACCTGTTTCACTTGAAACTCCTAT
TGGTGAAGAAGATGATAGCCATCTTGGTGATTTTATTGAAGATGAAGTGATTGAAAATCCAGTAGATTATACAACACGTG
TTGTTTTACGTGAACAATTAGATGAAGTTTTAGATACATTAACTGACCGTGAAGAAAATGTATTGAGACTACGTTTTGGT
CTTGATGATGGGAAAATGCGTACTTTAGAAGATGTTGGTAAAGTTTTCAACGTTACAAGAGAGCGTATCCGTCAAATTGA
AGCCAAAGCACTCCGCAAACTCCGCCACCCAAGCAGAAGCAAACAATTAAGAGACTTTATTGAGGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-84)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363