Detailed information NTG0948217

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: WDM00_RS01305
• Genome accession: NZ_CP147726
• Coordinates: 276458..277465 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain CNCTC 6536
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 271458..282465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDM00_RS01285 (WDM00_01285)	metJ	271463..271780 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
WDM00_RS01290 (WDM00_01290)	-	271890..273167 (-)	1278	WP_001278591.1	malic enzyme-like NAD(P)-binding protein	-
WDM00_RS01295 (WDM00_01295)	rpmE	273475..273693 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
WDM00_RS01300 (WDM00_01300)	priA	273948..276152 (+)	2205	WP_001247858.1	primosomal protein N'	-
WDM00_RS01305 (WDM00_01305)	cytR	276458..277465 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
WDM00_RS01310 (WDM00_01310)	-	277636..278187 (+)	552	WP_001891621.1	SPOR domain-containing protein	-
WDM00_RS01315 (WDM00_01315)	hslV	278324..278881 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
WDM00_RS01320 (WDM00_01320)	hslU	278947..280278 (+)	1332	WP_142629677.1	HslU--HslV peptidase ATPase subunit	-
WDM00_RS01325 (WDM00_01325)	-	280382..281299 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
WDM00_RS01330 (WDM00_01330)	rraA	281374..281889 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=948217 WDM00_RS01305 WP_000224452.1 276458..277465(+) (cytR) [Vibrio cholerae strain CNCTC 6536]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=948217 WDM00_RS01305 WP_000224452.1 276458..277465(+) (cytR) [Vibrio cholerae strain CNCTC 6536]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGCAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTAATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGTGGACATGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904