Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   WDW98_RS18995 Genome accession   NZ_CP147720
Coordinates   4012468..4013526 (-) Length   352 a.a.
NCBI ID   WP_005410860.1    Uniprot ID   A0A854DVP1
Organism   Stenotrophomonas maltophilia strain CGMCC 1.1788     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4007468..4018526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW98_RS18975 - 4008424..4010391 (-) 1968 WP_005410855.1 type IV pilus secretin PilQ -
  WDW98_RS18980 - 4010440..4010916 (-) 477 WP_338796284.1 pilus assembly protein PilP -
  WDW98_RS18985 pilO 4010943..4011599 (-) 657 WP_005410857.1 type 4a pilus biogenesis protein PilO -
  WDW98_RS18990 - 4011596..4012468 (-) 873 WP_024958263.1 PilN domain-containing protein -
  WDW98_RS18995 pilM 4012468..4013526 (-) 1059 WP_005410860.1 pilus assembly protein PilM Machinery gene
  WDW98_RS19000 - 4013746..4016169 (+) 2424 WP_338795075.1 penicillin-binding protein 1A -
  WDW98_RS19005 - 4016577..4017221 (+) 645 WP_024958265.1 hypothetical protein -
  WDW98_RS19010 - 4017481..4018224 (-) 744 WP_024958266.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37739.38 Da        Isoelectric Point: 4.4047

>NTDB_id=948207 WDW98_RS18995 WP_005410860.1 4012468..4013526(-) (pilM) [Stenotrophomonas maltophilia strain CGMCC 1.1788]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=948207 WDW98_RS18995 WP_005410860.1 4012468..4013526(-) (pilM) [Stenotrophomonas maltophilia strain CGMCC 1.1788]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGTGTGGAACATTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTAGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCCATGAACCGTTCAGGCAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGGTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAACTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGCGAGCTGCCGGT
GTCCATCGACGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTACGAGGAG
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGTGAGTTCAACCGCGTTGATCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGCGGGCTGCCGGAAATGGTCGAGGAGCAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGCCCCAAGGTGAATGCGCATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854DVP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477