Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8609_RS00955 Genome accession   NZ_AP028412
Coordinates   186322..187827 (-) Length   501 a.a.
NCBI ID   WP_002869505.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12128     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 181322..192827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8609_RS00925 (I12128_01830) - 181524..182708 (-) 1185 WP_011049610.1 metallophosphoesterase -
  R8609_RS00930 (I12128_01840) - 182718..182927 (-) 210 WP_032584648.1 alkylphosphonate utilization protein -
  R8609_RS00935 (I12128_01850) - 182920..183639 (-) 720 WP_002867107.1 TerC family protein -
  R8609_RS00940 (I12128_01860) purN 183711..184277 (-) 567 WP_032584647.1 phosphoribosylglycinamide formyltransferase -
  R8609_RS00945 (I12128_01870) - 184268..185638 (-) 1371 WP_032584645.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  R8609_RS00950 (I12128_01880) - 185622..186320 (-) 699 WP_002826913.1 NYN domain-containing protein -
  R8609_RS00955 (I12128_01890) comM 186322..187827 (-) 1506 WP_002869505.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8609_RS00960 (I12128_01900) def 187824..188351 (-) 528 WP_002851936.1 peptide deformylase -
  R8609_RS00965 (I12128_01910) clpP 188387..188971 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R8609_RS00970 (I12128_01920) tig 188971..190305 (-) 1335 WP_002869504.1 trigger factor -
  R8609_RS00975 (I12128_01930) folE 190448..191020 (+) 573 WP_002869503.1 GTP cyclohydrolase I FolE -
  R8609_RS00980 (I12128_01940) fliI 191020..192405 (+) 1386 WP_002934863.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56449.46 Da        Isoelectric Point: 8.7417

>NTDB_id=94819 R8609_RS00955 WP_002869505.1 186322..187827(-) (comM) [Campylobacter jejuni strain IDH-12128]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLNEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNISKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=94819 R8609_RS00955 WP_002869505.1 186322..187827(-) (comM) [Campylobacter jejuni strain IDH-12128]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGTTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGACATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGCCTTGTT
TATATCATGCCTCCTCAAAGTTTAAATGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCTA
GAATTGGAGAAGTCGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAGCAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.695

99.601

0.475

Multiple sequence alignment