Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8953_RS08955 Genome accession   NZ_AP028409
Coordinates   1713561..1715066 (-) Length   501 a.a.
NCBI ID   WP_002778536.1    Uniprot ID   A0ABP2NPV3
Organism   Campylobacter coli strain IDH-11999     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1708561..1720066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8953_RS08920 (I11999_17600) - 1708803..1709543 (-) 741 WP_002845158.1 TerC family protein -
  R8953_RS08925 (I11999_17610) - 1709684..1709989 (+) 306 WP_002845159.1 hypothetical protein -
  R8953_RS08930 (I11999_17620) - 1710068..1710400 (+) 333 WP_171821724.1 ankyrin repeat domain-containing protein -
  R8953_RS08935 - 1710567..1710803 (+) 237 WP_032685402.1 hypothetical protein -
  R8953_RS08940 (I11999_17640) purN 1710941..1711516 (-) 576 WP_002845165.1 phosphoribosylglycinamide formyltransferase -
  R8953_RS08945 (I11999_17650) - 1711507..1712877 (-) 1371 WP_002801372.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  R8953_RS08950 (I11999_17660) - 1712861..1713559 (-) 699 WP_002778537.1 NYN domain-containing protein -
  R8953_RS08955 (I11999_17670) comM 1713561..1715066 (-) 1506 WP_002778536.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8953_RS08960 (I11999_17680) def 1715063..1715590 (-) 528 WP_002778535.1 peptide deformylase -
  R8953_RS08965 (I11999_17690) clpP 1715618..1716202 (-) 585 WP_002778534.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R8953_RS08970 (I11999_17700) tig 1716202..1717536 (-) 1335 WP_002778532.1 trigger factor -
  R8953_RS08975 (I11999_17710) folE 1717657..1718229 (+) 573 WP_002778530.1 GTP cyclohydrolase I FolE -
  R8953_RS08980 (I11999_17720) fliI 1718229..1719614 (+) 1386 WP_002805153.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56608.64 Da        Isoelectric Point: 8.7459

>NTDB_id=94812 R8953_RS08955 WP_002778536.1 1713561..1715066(-) (comM) [Campylobacter coli strain IDH-11999]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=94812 R8953_RS08955 WP_002778536.1 1713561..1715066(-) (comM) [Campylobacter coli strain IDH-11999]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTAGTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGTATGCACAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGTAGTGAAAATGAGA
TTAAAAGATATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(18-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.293

99.601

0.461

Multiple sequence alignment