Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | R8953_RS06075 | Genome accession | NZ_AP028409 |
| Coordinates | 1179467..1179847 (-) | Length | 126 a.a. |
| NCBI ID | WP_002776373.1 | Uniprot ID | A0ABN0ERI9 |
| Organism | Campylobacter coli strain IDH-11999 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1174467..1184847
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8953_RS06050 (I11999_11900) | aspS | 1174980..1176731 (+) | 1752 | WP_002784258.1 | aspartate--tRNA ligase | - |
| R8953_RS06055 (I11999_11910) | - | 1176728..1177303 (+) | 576 | WP_002776379.1 | adenylate kinase | - |
| R8953_RS06060 (I11999_11920) | ppa | 1177313..1177831 (+) | 519 | WP_002776378.1 | inorganic diphosphatase | - |
| R8953_RS06065 (I11999_11930) | msrA | 1177879..1178379 (+) | 501 | WP_002776375.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
| R8953_RS06070 (I11999_11940) | - | 1178602..1179456 (-) | 855 | WP_370300696.1 | RsmB/NOP family class I SAM-dependent RNA methyltransferase | - |
| R8953_RS06075 (I11999_11950) | dprB | 1179467..1179847 (-) | 381 | WP_002776373.1 | Holliday junction resolvase RuvX | Machinery gene |
| R8953_RS06080 (I11999_11960) | dprA | 1179844..1180614 (-) | 771 | WP_004284970.1 | DNA-processing protein DprA | Machinery gene |
| R8953_RS06085 (I11999_11970) | - | 1180604..1181635 (-) | 1032 | WP_002820415.1 | divergent polysaccharide deacetylase family protein | - |
| R8953_RS06090 (I11999_11980) | ilvC | 1181638..1182660 (-) | 1023 | WP_002776360.1 | ketol-acid reductoisomerase | - |
| R8953_RS06095 (I11999_11990) | - | 1182783..1184717 (+) | 1935 | WP_002781664.1 | ribonuclease R family protein | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13949.38 Da Isoelectric Point: 9.5520
>NTDB_id=94804 R8953_RS06075 WP_002776373.1 1179467..1179847(-) (dprB) [Campylobacter coli strain IDH-11999]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI
Nucleotide
Download Length: 381 bp
>NTDB_id=94804 R8953_RS06075 WP_002776373.1 1179467..1179847(-) (dprB) [Campylobacter coli strain IDH-11999]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
42.063 |
100 |
0.421 |