Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   IG620_RS13940 Genome accession   NZ_CP147682
Coordinates   2894961..2896115 (+) Length   384 a.a.
NCBI ID   WP_004732589.1    Uniprot ID   N9NVG2
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2889961..2901115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS13925 (IG620_13925) - 2891647..2893734 (-) 2088 WP_005249632.1 TonB-dependent copper receptor -
  IG620_RS13930 (IG620_13930) - 2893807..2894217 (-) 411 WP_004644876.1 DUF2946 family protein -
  IG620_RS13935 (IG620_13935) def 2894310..2894840 (-) 531 WP_004644875.1 peptide deformylase -
  IG620_RS13940 (IG620_13940) tsaP 2894961..2896115 (+) 1155 WP_004732589.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IG620_RS13945 (IG620_13945) dprA 2896172..2897311 (+) 1140 WP_005249630.1 DNA-processing protein DprA Machinery gene
  IG620_RS13950 (IG620_13950) - 2897353..2897922 (+) 570 WP_005249628.1 Sua5/YciO/YrdC/YwlC family protein -
  IG620_RS13955 (IG620_13955) - 2898356..2899252 (-) 897 WP_005265470.1 DMT family transporter -
  IG620_RS13960 (IG620_13960) - 2899443..2899988 (+) 546 WP_005249624.1 glutathione peroxidase -
  IG620_RS13965 (IG620_13965) - 2900319..2900918 (+) 600 WP_005108413.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42165.45 Da        Isoelectric Point: 9.0687

>NTDB_id=948024 IG620_RS13940 WP_004732589.1 2894961..2896115(+) (tsaP) [Acinetobacter lwoffii strain CCTCC M20191004]
MKKVLKGMPFFSALGFKNQMLALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGHGLVVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQIMVFKTFDQLSYAYVLESELPIKMGAGIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=948024 IG620_RS13940 WP_004732589.1 2894961..2896115(+) (tsaP) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCCGTTTGTGT
AGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCCAATG
CACCGAACGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGACATCTCGAAACGTTTCCTGAAAAATCCGGTACGTTGG
CCGGAAATCTGGGCCAGCAATAAGCACGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGTTAATGTGCGATTA
CCAGGGCCGTCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAACCCCAGATTCGGGTTGAATCTTTAAATAATACCATTCCAGTGATTCCGCTTGAGCATATCAAGCAGTGGCTGGAA
CGCTATACCCTTCTGGCACCTGATTCAGTTCAGGGCACACCCTACATTCTCGGAACTGCAGATCAGCGCGTACTGGCTGG
CAAAGGCCAGAAAGTTTATGCACGTGGTCACGGTCTGGTAGTTGGCCAACGCTATGCGGTGTATCGTGAAGCGGAACCGT
ATGTATTTACGGATGCAAACGGCAAGAAATATACGGCTGCACTGGAGCTGCAACAGGTGGCATCTGGTATTGCAGTTCGT
GGCGAAGGTGATGTGACCACACTTGAACTGACAGATAGTTACAATGCTGAAGTACGTCGCGGTGATCGTGTCTTACCTGA
ATACGATCCAATGTTACCGACTCTGTTCTATCCGACCAATGCAGAAAATATTGCTGCCGGTGGTCAGATTGTGCGTGTAT
TGGGGTCAATTGGTACAGCAGCACGTCATAGTGTCGTTACCATTGACCGTGGTACGGCACATGGGGTTCAGACTGGACAT
GTCTTTAGCGTGAATCAAAAAGGTGAAGTGGTGACTGATCCTAAAACTAAAGAACGTGTGCAATTGCCGGGCGAGCGTAT
TGGCCAGATCATGGTATTTAAAACCTTCGATCAATTAAGCTATGCTTATGTGCTGGAAAGTGAATTACCAATCAAGATGG
GTGCAGGGATTCAAGCACCTCTTTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9NVG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.792

100

0.68