Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IG620_RS13320 Genome accession   NZ_CP147682
Coordinates   2761355..2761882 (-) Length   175 a.a.
NCBI ID   WP_004732447.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2756355..2766882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS13300 (IG620_13300) - 2756601..2757479 (-) 879 WP_004732438.1 hypothetical protein -
  IG620_RS13305 (IG620_13305) aroB 2757490..2758569 (-) 1080 WP_004732440.1 3-dehydroquinate synthase -
  IG620_RS13310 (IG620_13310) aroK 2758598..2759134 (-) 537 WP_004732442.1 shikimate kinase AroK -
  IG620_RS13315 (IG620_13315) pilQ 2759171..2761336 (-) 2166 WP_004732444.1 type IV pilus secretin PilQ family protein Machinery gene
  IG620_RS13320 (IG620_13320) pilP 2761355..2761882 (-) 528 WP_004732447.1 pilus assembly protein PilP Machinery gene
  IG620_RS13325 (IG620_13325) - 2761882..2762604 (-) 723 Protein_2572 type 4a pilus biogenesis protein PilO -
  IG620_RS13330 (IG620_13330) - 2762601..2763240 (-) 640 Protein_2573 PilN domain-containing protein -
  IG620_RS13335 (IG620_13335) pilM 2763240..2764298 (-) 1059 WP_338840067.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19302.44 Da        Isoelectric Point: 7.1658

>NTDB_id=948015 IG620_RS13320 WP_004732447.1 2761355..2761882(-) (pilP) [Acinetobacter lwoffii strain CCTCC M20191004]
MKNIKITSALTLGFLLLGCDSRIDAVNQEMANIRNQPPLPIEPAPDFMPVETFNYAAHQIKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLTMKGSMRNQAGQILALIQTPDGEVERIQRGSYMGLNHGRVVGITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=948015 IG620_RS13320 WP_004732447.1 2761355..2761882(-) (pilP) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGAAGAACATTAAAATTACTTCAGCTTTAACACTTGGGTTTTTATTGTTGGGATGCGATTCACGCATTGATGCAGTCAA
TCAGGAAATGGCTAATATTCGTAATCAGCCACCTTTGCCAATTGAACCGGCTCCTGATTTTATGCCAGTTGAAACCTTCA
ACTATGCAGCACATCAGATCAAAAGCCCTTTTTTACCAAGCTCTCTGGCTGCTGAACTGAAAATTATGGCGGGGAAACGG
GTTTATCCAAACCTATCACGTCAACTGCAACCGCTAGAAAGTTATCCGCTCGAAACATTGACCATGAAAGGCAGTATGCG
CAATCAGGCAGGACAAATTCTGGCTTTAATCCAGACGCCTGATGGTGAGGTTGAGCGGATTCAACGTGGTAGCTATATGG
GACTTAATCATGGTCGTGTGGTTGGAATTACACCAACACAAATCGATTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCGCGAAGTCTGGTTCTCATTGGGCCGGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76.571

100

0.766
  comL Acinetobacter baylyi ADP1

72.781

96.571

0.703