Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   IG620_RS12510 Genome accession   NZ_CP147682
Coordinates   2613128..2613985 (-) Length   285 a.a.
NCBI ID   WP_004732216.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2608128..2618985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS12495 (IG620_12495) miaB 2609842..2611299 (+) 1458 WP_004732212.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IG620_RS12500 (IG620_12500) - 2611337..2612413 (+) 1077 WP_004732214.1 PhoH family protein -
  IG620_RS12505 (IG620_12505) ybeY 2612436..2612918 (+) 483 WP_004732215.1 rRNA maturation RNase YbeY -
  IG620_RS12510 (IG620_12510) tonB2 2613128..2613985 (-) 858 WP_004732216.1 TonB family protein Machinery gene
  IG620_RS12515 (IG620_12515) - 2614247..2614933 (+) 687 WP_004732218.1 hypothetical protein -
  IG620_RS12520 (IG620_12520) - 2615093..2615806 (+) 714 WP_004732221.1 DUF3108 domain-containing protein -
  IG620_RS12525 (IG620_12525) - 2615895..2616470 (+) 576 WP_004732222.1 xanthine phosphoribosyltransferase -
  IG620_RS12530 (IG620_12530) - 2616786..2617460 (-) 675 WP_004732224.1 hypothetical protein -
  IG620_RS12535 (IG620_12535) - 2617545..2618750 (-) 1206 WP_004732225.1 CsgG/HfaB family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32646.02 Da        Isoelectric Point: 6.5169

>NTDB_id=948012 IG620_RS12510 WP_004732216.1 2613128..2613985(-) (tonB2) [Acinetobacter lwoffii strain CCTCC M20191004]
MPLVRTWWKDPVFSSAVLTAGILHLIVLTLEFGMPQDRETSTKEIAVSLRQTDEKIEHADFLAQTDQQGSGKFREAHRMS
SDMPSPLLEQKAGEEQQESPDLLQQKQELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNQYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKSSVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=948012 IG620_RS12510 WP_004732216.1 2613128..2613985(-) (tonB2) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGCCTCTGGTCAGAACCTGGTGGAAAGATCCAGTGTTTAGCAGTGCCGTGCTCACCGCAGGCATTCTGCATTTGATCGT
ATTGACACTGGAATTTGGTATGCCGCAAGATCGGGAGACCAGCACCAAAGAAATTGCAGTCAGCTTGCGACAGACAGATG
AAAAAATTGAACACGCTGATTTTCTGGCCCAGACAGACCAGCAAGGTTCTGGCAAGTTTCGAGAAGCGCACCGGATGTCG
AGTGATATGCCATCTCCTTTGTTAGAGCAGAAGGCAGGGGAAGAACAACAAGAAAGTCCGGATCTGCTGCAACAGAAACA
GGAACTCAGTTTTGAAGAAAAAGTGCTGATGACCACCTTGAGCTGGCAAAAACAGGCAGAAGAAAATCAGCGTAAAAAAA
TGCAGGAGCAGTTACAAAGCCAGTTTCAGGCCAAAGCAGCCATGGTGGCCAGTCTGGAAGCGCAATATTTACAGCGTCAG
CAAAATTTTAGTCGTCAGCAAAAAATTAAAACTGTGGATGGCATTCAATCCAAGCAGGATGTCTCCGCAGCCTATCTGGA
AAAGTTCCGTCAGAAAGTAGAGTTTTATGGCAATCAGTATTATCCGGAAGCTGCCAAGCAGCAGAATCTGGCAGGTGAAG
TTCGTCTGATGGTGATCCTGAACCAGAATGGCGGAATTCGTGCCATTCGGCTGATTGACAGTTCAGGACATGCCATGCTG
GACGAAGCAGCTAAATCTTCCGTGCGTAAGGCAGCACCATTTGGTGCTTTCGACAGTAAAATGAAAGAAATTTCCGAACT
ACGGGTGATTCGTACCTGGCGATTTGATCCGGCAGAAGCAGAGTTTGAGGTACGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.401

97.895

0.709