Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IG620_RS01460 Genome accession   NZ_CP147682
Coordinates   317714..319936 (-) Length   740 a.a.
NCBI ID   WP_338840575.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 312714..324936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS01435 (IG620_01435) - 312909..313172 (-) 264 WP_004729352.1 DUF465 domain-containing protein -
  IG620_RS01440 (IG620_01440) - 313262..313591 (-) 330 WP_004278573.1 chaperone modulator CbpM -
  IG620_RS01445 (IG620_01445) - 314076..314537 (-) 462 WP_004647343.1 DUF2147 domain-containing protein -
  IG620_RS01450 (IG620_01450) - 314859..315734 (-) 876 WP_004278571.1 Hsp33 family molecular chaperone HslO -
  IG620_RS01455 (IG620_01455) - 315785..317638 (-) 1854 WP_338840573.1 cation:proton antiporter -
  IG620_RS01460 (IG620_01460) priA 317714..319936 (-) 2223 WP_338840575.1 primosomal protein N' Machinery gene
  IG620_RS01465 (IG620_01465) gspF 320087..321292 (+) 1206 WP_314137551.1 type II secretion system inner membrane protein GspF -
  IG620_RS01470 (IG620_01470) gspG 321372..321806 (+) 435 WP_004278567.1 type II secretion system major pseudopilin GspG -
  IG620_RS01475 (IG620_01475) - 322091..322426 (+) 336 WP_338840584.1 hypothetical protein -
  IG620_RS01480 (IG620_01480) lnt 322516..324075 (-) 1560 WP_338840585.1 apolipoprotein N-acyltransferase -
  IG620_RS01485 (IG620_01485) - 324072..324911 (-) 840 WP_338840586.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84113.06 Da        Isoelectric Point: 8.6437

>NTDB_id=947994 IG620_RS01460 WP_338840575.1 317714..319936(-) (priA) [Acinetobacter lwoffii strain CCTCC M20191004]
MQNSHTDSSPLYRVRVAVPVHVFDCFDYTMSAEQFEQAQIGTRVLVSFGRQNLVGVIIEKLSADTPLDPRFKLKAVTELL
DERAIIDAKVLSLLTWSAQYYQFPIGEVVHSALPTLLRQGKPYNLLARTWKLLDTNAEAKVRRSDKQQEAYRILKLHPVG
TTETVLNMAGIETATLKALEKKEICACVLEPQDFSPQPMQLAQMPLTANPEQKHAVEQVLKYRNQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQSKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQSAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVILGSATPSIDSYALVQHGKMQALELNQRAGTALMPKIHI
LDLKVAQKKHGISLQLIQDIKKRLEKKEQVLIFLNRRGYAPVLLCGSCGWQAQCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHQELVTLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVNENYRVFAQQTLKERQMAKM
PPYRYAILIRCESKDQSQNTEFLQKHAALLRQYPDLALDIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYARSWWQNM
LQDKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=947994 IG620_RS01460 WP_338840575.1 317714..319936(-) (priA) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGCAAAATTCTCACACCGATTCCAGTCCACTTTATCGCGTACGCGTTGCTGTACCTGTGCATGTATTTGATTGTTTTGA
TTACACAATGAGTGCAGAACAATTTGAACAAGCGCAGATTGGCACACGTGTACTGGTGTCGTTTGGTCGGCAGAATCTGG
TCGGGGTGATTATCGAAAAACTGTCCGCAGACACTCCTCTCGATCCACGCTTTAAGCTTAAAGCTGTGACCGAACTGCTC
GATGAACGAGCTATTATAGATGCCAAAGTTTTAAGTTTGCTGACATGGTCAGCGCAGTATTACCAGTTCCCGATCGGTGA
AGTCGTCCACAGTGCCTTGCCGACCCTGCTGCGTCAGGGTAAGCCTTACAACCTGCTGGCCCGTACCTGGAAGCTCCTGG
ACACTAATGCCGAGGCCAAAGTACGCCGTTCGGACAAGCAGCAGGAAGCCTACCGGATTTTAAAACTGCATCCGGTCGGA
ACAACTGAAACTGTGCTCAACATGGCCGGGATTGAAACCGCGACCTTAAAAGCGCTGGAGAAAAAAGAGATTTGCGCCTG
TGTGCTGGAGCCACAAGATTTCAGTCCGCAGCCGATGCAACTGGCACAGATGCCGCTAACGGCCAATCCTGAACAAAAAC
ATGCAGTCGAACAAGTATTAAAATATCGCAATCAATATCAGGCTTTTTTACTGGATGGTCTGACCGGCAGCGGTAAAACT
GAAGTGTATTTGCAGATCATGGAACAGGTACTGAAACAGAGCAAACAGGTGCTAGTGCTGGTGCCGGAAATCGGCCTGAC
GCCGCAAACCATCAGCCGTTTTCAGTCCCGTTTTCATTGCCATATTGCGCTGCTGCATTCCGGGCTGAATGATTCCAAAC
GGCTACAAGCCTGGCAGTCGGCAGAAACTGGCAAAGCCTCAATTGTGCTTGGTACACGTTCCGCCATTTATACGCCAATG
CCGAATCTGGGCCTGATCATTCTGGATGAAGAACATGACCTGTCCTTTAAACAGCAGGAAGGCTTCCGCTATCATGCTCG
AGATGTCGCCCTGTACCGCGGCCATTTACAGCAATGTCCGGTAATCTTAGGTTCAGCCACACCAAGTATTGACAGTTATG
CGCTGGTGCAACATGGCAAGATGCAGGCACTGGAGCTAAACCAGCGTGCCGGCACGGCCTTGATGCCCAAAATCCATATT
CTGGATTTAAAAGTTGCGCAAAAAAAGCATGGGATTAGCCTGCAATTGATTCAGGACATCAAAAAGCGTCTGGAGAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGCCGTGGCTATGCCCCCGTCTTGCTTTGTGGCAGCTGTGGCTGGCAGGCGCAAT
GTCCGCACTGTGATGCCAACTTCACTGTACACCGCCAGCCTTATCAGCATCTGCATTGCCATCACTGCGGTACTATTCAC
CGCATGCCGGAACACTGCCCGCAATGTCAGCATCAGGAACTGGTTACACTGGGTATGGGCACCGGCAAAGTCGAAGAACA
TCTGAATGAACTCTTTCCGGATTTTGAGGTGATTCGGGTCGATCGCGATTCCACCAGTCGGGTCGGCAGCTGGCAAAAAA
TTTATGACAAGATTCAGAAAAGCGAACCTGCCATTTTGCTCGGCACCCAGATGCTGGCCAAGGGACACCATTTTCCTTAT
GTCACTCTGGTGGCGATTCTGGATATCGATTCCGGTCTGCTCAGTGTGGATTTCCGTGCTACTGAACGGACTGCACAACT
GATTGTGCAGGTGGCAGGCCGCGCAGGCCGTGGTGAACATAAGGGTGATGTTTACCTACAGACCCTCAGACCTGATCATG
CCCTGCTGAATACCCTGGTCAATGAAAATTATCGCGTATTTGCCCAGCAAACCTTAAAAGAACGGCAGATGGCCAAAATG
CCGCCCTATCGTTATGCCATCCTGATTCGCTGTGAATCCAAGGATCAGTCACAAAATACCGAATTCTTACAGAAACATGC
AGCACTCCTCAGGCAATATCCTGATCTGGCGCTGGACATCTGGGGACCGATTCCTGCGCCAATGGAACGCAAGGCGGGGC
GCTATCAGTCGCATATGGTGCTATTGTCAGCGGATCGTCCACGTTTGCATTACTATGCGCGCAGCTGGTGGCAAAACATG
CTGCAGGATAAACCTTCCAGCATGAAGCTCACGCTGGACATCGACCCTCAGGAACTGAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(209-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

70.981

99.189

0.704