Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IG620_RS01175 Genome accession   NZ_CP147682
Coordinates   250281..250607 (+) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 245281..255607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS01150 (IG620_01150) hemC 245964..246887 (+) 924 WP_004647306.1 hydroxymethylbilane synthase -
  IG620_RS01155 (IG620_01155) - 246887..247666 (+) 780 WP_004278631.1 uroporphyrinogen-III synthase -
  IG620_RS01160 (IG620_01160) - 247663..248502 (+) 840 WP_004647307.1 hypothetical protein -
  IG620_RS01165 (IG620_01165) - 248509..249702 (+) 1194 WP_338840527.1 heme biosynthesis protein HemY -
  IG620_RS01170 (IG620_01170) - 249711..250139 (+) 429 WP_338840528.1 thioesterase family protein -
  IG620_RS01175 (IG620_01175) hns 250281..250607 (+) 327 WP_026055760.1 H-NS histone family protein Regulator
  IG620_RS01180 (IG620_01180) gspN 250790..251533 (+) 744 WP_338840529.1 type II secretion system protein N -
  IG620_RS01185 (IG620_01185) - 251533..252387 (+) 855 WP_044113058.1 type II secretion system protein N -
  IG620_RS01190 (IG620_01190) gspD 252426..254687 (+) 2262 WP_338840530.1 type II secretion system secretin GspD -
  IG620_RS01195 (IG620_01195) - 254750..255409 (+) 660 WP_338840531.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=947993 IG620_RS01175 WP_026055760.1 250281..250607(+) (hns) [Acinetobacter lwoffii strain CCTCC M20191004]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=947993 IG620_RS01175 WP_026055760.1 250281..250607(+) (hns) [Acinetobacter lwoffii strain CCTCC M20191004]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAGTCACTGATTGCTTCAAA
AAAAGATCAAGAGATTGAAGATGCTTATCAGCAAATTTTGGCAGTTGCTGAGAAAGTTGGTATGACAGTTGAACAGTTAC
TTGAATTTGGTGCGTCTAAACGTAAGAAATCGTCACGTAAGTCGGTTGAACCGCGTTACCGTAGCAAAAGCAATCCGGAC
GATACCTGGACTGGCCGTGGTAAACAGCCGCGCTGGTTGGTGGCTGAATTGGAAAAAGGCGCAAAGCTGGACGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787