Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WCO32_RS14580 Genome accession   NZ_CP147668
Coordinates   2998958..2999584 (-) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain RH3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2993958..3004584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCO32_RS14565 (WCO32_14565) helD 2994197..2996251 (-) 2055 WP_045614931.1 DNA helicase IV -
  WCO32_RS14570 (WCO32_14570) - 2996374..2996820 (+) 447 WP_003858149.1 YccF domain-containing protein -
  WCO32_RS14575 (WCO32_14575) yccS 2996839..2999001 (+) 2163 WP_015570895.1 YccS family putative transporter -
  WCO32_RS14580 (WCO32_14580) sxy/tfoX 2998958..2999584 (-) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  WCO32_RS14585 (WCO32_14585) sulA 2999802..3000311 (+) 510 WP_032104231.1 SOS-induced cell division inhibitor SulA -
  WCO32_RS14590 (WCO32_14590) ompA 3000668..3001720 (+) 1053 WP_017694761.1 porin OmpA -
  WCO32_RS14595 (WCO32_14595) matP 3001786..3002238 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  WCO32_RS14600 (WCO32_14600) - 3002425..3004185 (+) 1761 WP_017384808.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=947984 WCO32_RS14580 WP_017384804.1 2998958..2999584(-) (sxy/tfoX) [Enterobacter hormaechei strain RH3]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=947984 WCO32_RS14580 WP_017384804.1 2998958..2999584(-) (sxy/tfoX) [Enterobacter hormaechei strain RH3]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572