Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   WDK80_RS01575 Genome accession   NZ_CP147665
Coordinates   338010..338483 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain LZFZ3604     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333010..343483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDK80_RS01550 - 333474..335579 (-) 2106 WP_001117590.1 HD domain-containing protein -
  WDK80_RS01555 - 335619..335748 (-) 130 Protein_297 hypothetical protein -
  WDK80_RS01560 rpoZ 335787..336065 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  WDK80_RS01565 gmk 336138..336767 (-) 630 WP_000015937.1 guanylate kinase -
  WDK80_RS01570 ispH 336890..337840 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  WDK80_RS01575 fimU 338010..338483 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  WDK80_RS01580 pilV 338477..339037 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  WDK80_RS01585 pilW 339038..340039 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  WDK80_RS01590 pilX 340036..340854 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=947929 WDK80_RS01575 WP_001214061.1 338010..338483(+) (fimU) [Acinetobacter baumannii strain LZFZ3604]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=947929 WDK80_RS01575 WP_001214061.1 338010..338483(+) (fimU) [Acinetobacter baumannii strain LZFZ3604]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987